PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02636.1.p
Common NameEUGRSUZ_A02636, LOC104415177
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 267aa    MW: 30657.5 Da    PI: 6.6087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02636.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.47.5e-4241371127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lppGfrF Pt+eelv++yL++k+e+++      +++v++ +diy+++PwdLp+     ++a+ ++w+fF++r++++ +g r++r t++gyWka
  Eucgr.A02636.1.p   4 LPPGFRFFPTEEELVSFYLRHKLEATReallGMIQRVMPVLDIYEFNPWDLPQfagdLCRADPEQWFFFIPRQESEYRGGRPRRLTTTGYWKA 96 
                       79**********************99966643334578888***********656764556788***************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       tg+   v+s +++ vglk+t+vfy+grapkg+kt+W m+ey+
  Eucgr.A02636.1.p  97 TGSPGFVYS-SNRIVGLKRTMVFYTGRAPKGVKTEWKMNEYK 137
                       *********.8999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-472165IPR003441NAC domain
PROSITE profilePS5100547.7924165IPR003441NAC domain
PfamPF023656.0E-225137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEGLPPGFRF FPTEEELVSF YLRHKLEATR EALLGMIQRV MPVLDIYEFN PWDLPQFAGD  60
LCRADPEQWF FFIPRQESEY RGGRPRRLTT TGYWKATGSP GFVYSSNRIV GLKRTMVFYT  120
GRAPKGVKTE WKMNEYKAIE GEASSPQEIP VAPRHEFSVC RVYKKTKTLR SFDRRPMGEI  180
IRSSHTFQQG TISEDDHHRH HQEMASSHQS SPPFVERASS SPDSSGVSED HGTIPLQARG  240
LGSNTDMEML PSDTELFLPE WEQFWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-34416517165NO APICAL MERISTEM PROTEIN
1ut4_B5e-34416517165NO APICAL MERISTEM PROTEIN
1ut7_A5e-34416517165NO APICAL MERISTEM PROTEIN
1ut7_B5e-34416517165NO APICAL MERISTEM PROTEIN
4dul_A5e-34416517165NAC domain-containing protein 19
4dul_B5e-34416517165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02636.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024734.10.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR37e-66NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A059DJF20.0A0A059DJF2_EUCGR; Uncharacterized protein
STRINGXP_010024734.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-60NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]