PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A02637.1.p

Common Name

EUGRSUZ_A02637, LOC104447510

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 178aa MW: 20616.6 Da PI: 9.014

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02637.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.6	1.4e-41	4	137	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Pt+eelv++yL++k+e+++ ++++vi+ +diy+++PwdLp+ ++a+ ++w+fF++ + ++ +g r++r t++gyWka Eucgr.A02637.1.p 4 LPPGFRFFPTEEELVSFYLRNKLEATReallGQIQRVISVLDIYEFDPWDLPQfaadLCHADPEQWFFFIPMQDSEYHGGRPRRLTTTGYWKA 96 79********************99978776667789999*******656664455778************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 tg+ v+s +++ +glk+t+vfy+gr+p+g kt+W m+ey+ Eucgr.A02637.1.p 97 TGSPGFVYS-SNRIIGLKRTMVFYTGRTPNGMKTEWKMNEYK 137 *****.8999*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-46	2	165	IPR003441	NAC domain
PROSITE profile	PS51005	46.891	4	165	IPR003441	NAC domain
Pfam	PF02365	3.8E-22	5	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEGLPPGFRF FPTEEELVSF YLRNKLEATR EALLGQIQRV ISVLDIYEFD PWDLPQFAAD 60 LCHADPEQWF FFIPMQDSEY HGGRPRRLTT TGYWKATGSP GFVYSSNRII GLKRTMVFYT 120 GRTPNGMKTE WKMNEYKAIE GAASSPQEIP VAPRHEFSVC RVYKKTKTLR SFDRRPM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-34	4	168	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-34	4	168	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-34	4	168	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-34	4	168	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-34	4	168	20	171	NAC domain-containing protein 19
3swm_B	8e-34	4	168	20	171	NAC domain-containing protein 19
3swm_C	8e-34	4	168	20	171	NAC domain-containing protein 19
3swm_D	8e-34	4	168	20	171	NAC domain-containing protein 19
3swp_A	8e-34	4	168	20	171	NAC domain-containing protein 19
3swp_B	8e-34	4	168	20	171	NAC domain-containing protein 19
3swp_C	8e-34	4	168	20	171	NAC domain-containing protein 19
3swp_D	8e-34	4	168	20	171	NAC domain-containing protein 19
4dul_A	8e-34	4	168	17	168	NAC domain-containing protein 19
4dul_B	8e-34	4	168	17	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02637.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059543.1	1e-131	PREDICTED: NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	3e-62	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059DIE4	1e-130	A0A059DIE4_EUCGR; Uncharacterized protein
STRING	XP_010059543.1	1e-131	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-64	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Eucgr.A02637.1.p
Entrez Gene	104447510

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]