PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02733.1.p
Common NameEUGRSUZ_A02733, LOC104448337
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 325aa    MW: 35069.4 Da    PI: 9.9944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02733.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-1268112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Eucgr.A02733.1.p  68 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 112
                       789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1662118IPR009057Homeodomain-like
PROSITE profilePS5129414.1863117IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1866115IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.7E-666118IPR009057Homeodomain-like
SMARTSM007176.5E-1067115IPR001005SANT/Myb domain
PfamPF002494.8E-1068112IPR001005SANT/Myb domain
CDDcd001671.27E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVSKNPSPAE GFYLDPNGMA LPGFGPFSAA NAAAAAAAAA AAAASATSAS SEDLAKKVRK  60
PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG  120
TNEHLPPPRP KRKAAHPYPQ KASKNASVPT QAAGAFHASP ALLESGYVLR PDSSSVLRNP  180
VNNAPVSSWT NKTVQTVSFS RPTKGTNVIN NSCSSTDSTP RTRPSCETTD QGHNAPALRV  240
LPDFAQVYGF IGSVFDPNTS GHVQKLKKMD PIDVETVLLL MRNLSINLTS PDFEDHRKLL  300
STYEIDTPTG GGAHTRNDRP NNVM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02733.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060421.10.0PREDICTED: protein REVEILLE 6
SwissprotQ8H0W31e-132RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A059DJQ20.0A0A059DJQ2_EUCGR; Uncharacterized protein
STRINGXP_010060421.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-110MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]