PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02804.1.p
Common NameEUGRSUZ_A02804, LOC104448993
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 330aa    MW: 35565.6 Da    PI: 4.5094
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02804.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1131.9e-35271182102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++++isw+++g++fvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll
  Eucgr.A02804.1.p  27 FLTKTYQLVDDPAVDDVISWNDDGSAFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR---------WEFSNDCFRRGEKRLL 110
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Eucgr.A02804.1.p 111 CEIQRRKV 118
                       ******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.49E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAPPPPPLEQ RGDSPAGESQ RSTPTPFLTK TYQLVDDPAV DDVISWNDDG SAFVVWNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKL VPDRWEFSND CFRRGEKRLL CEIQRRKVSP  120
SPTAAAAAVV PDSVATLPTA IPTAMPVISP SSSGDEQVMS SQHSSPPSAC GQNCTAEIMD  180
ENERLRKENA FLSRELTQMK SLCNNILSLM SGYAPNGRPQ EASSRPVARA LDLMPVKRPT  240
GGGGGGGGGD GDDEEEEEEE DEEEDGEGSP KLFGVALGMK RGREIREGEV AVMSGSDAML  300
RLQQPGSGGV KFEPSDGDQR AISFPSGIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252712120125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02804.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061278.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ6Z9C81e-85HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A059DIV80.0A0A059DIV8_EUCGR; Uncharacterized protein
STRINGXP_010061278.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-81heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]