PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02817.1.p
Common NameEUGRSUZ_A02817
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 254aa    MW: 26641.4 Da    PI: 4.4803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02817.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.9e-1590138255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr  +++g+Wv+eIr+p++   ++r++lg++  +e+Aa+a + a+++l+g
  Eucgr.A02817.1.p  90 LYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPNPEMAAAAFDVAALALKG 138
                       69***6..668*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-889138IPR001471AP2/ERF domain
CDDcd000181.01E-1689148No hitNo description
SMARTSM003802.5E-2790152IPR001471AP2/ERF domain
PROSITE profilePS5103219.65190146IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1790148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2590147IPR001471AP2/ERF domain
PRINTSPR003675.4E-691102IPR001471AP2/ERF domain
PRINTSPR003675.4E-6128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLLRPVLWPA SMANQPPGEP QPNPPPPPPP APAIQIPDQP PHNSPSSSSS SSSSSSSLAT  60
TGDRGGSSPR PMLSPSGSSP LAQSTGRHPL YRGVRSRSGK WVSEIREPRK TTRIWLGTYP  120
NPEMAAAAFD VAALALKGSD AALNFPHDVP NYPVPNSVSA ADIRSAAASA AASRGARTEA  180
EGKEDPVGRP ESASEISQEP GQEFMDEDEL LNMPKLLDDM AEGMLVSPPR TQMASENDSP  240
EDSDGGESLW SYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13881491275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02817.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025136.21e-178PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ901e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A059DK241e-177A0A059DK24_EUCGR; Uncharacterized protein
STRINGXP_010025136.11e-138(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-40ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]