PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02820.1.p
Common NameEUGRSUZ_A02820, LOC104449110
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 197aa    MW: 21620.4 Da    PI: 6.1401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-173484155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr +  +g+Wv+e+r+p++   + r++lg+f t e+Aa+a++ a+++l+g
  Eucgr.A02820.1.p 34 PVYRGVRLRD-SGKWVCEVREPRK---KSRIWLGTFPTVEMAARAHDVAALALRG 84
                      68*******9.7******999843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-133484IPR001471AP2/ERF domain
SMARTSM003801.0E-283598IPR001471AP2/ERF domain
PROSITE profilePS5103222.0763592IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-213594IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-313594IPR001471AP2/ERF domain
PRINTSPR003673.5E-83647IPR001471AP2/ERF domain
CDDcd000181.74E-293694No hitNo description
PRINTSPR003673.5E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAAPGNFSDE EVRLASHHPK KRAGRKKFRE TRHPVYRGVR LRDSGKWVCE VREPRKKSRI  60
WLGTFPTVEM AARAHDVAAL ALRGRSACLN FADSAWRLPV PASADTKDIQ KAAAKAAEAF  120
QPVESESEDV MSGDEKKSPS EEGMLYDDED VFGMPGLLMN MAEGMLLPPP RCGGDGYGGE  180
DDGNLDAYVS LWSYSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1433911271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02820.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0688280.0JQ068828.1 Eucalyptus grandis trancription factor CBF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061439.11e-143PREDICTED: dehydration-responsive element-binding protein 1D
SwissprotQ9FJ931e-73DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLH6WBT51e-142H6WBT5_EUCGR; Trancription factor CBF2
STRINGXP_010061439.11e-143(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.15e-58C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]