PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02830.1.p
Common NameEUGRSUZ_A02830
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 221aa    MW: 24455.7 Da    PI: 8.8668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.4e-1460110155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr +  +g+Wv+e+r+p++   + r+ l +f t e+Aa+a++ a++ l+g
  Eucgr.A02830.1.p  60 PVYRGVRLRD-KGKWVCEVREPRK---KSRICLSTFPTVEMAARAHDVAALVLRG 110
                       68*******9.7******999843...6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1060110IPR001471AP2/ERF domain
SMARTSM003801.1E-2161124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-2761120IPR001471AP2/ERF domain
PROSITE profilePS5103219.32261118IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-1861120IPR016177DNA-binding domain
CDDcd000181.97E-2462120No hitNo description
PRINTSPR003676.4E-96273IPR001471AP2/ERF domain
PRINTSPR003676.4E-9100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNPLSSYSYP NSFRFNFAEP PSDSRSATAL GNFSHKEVLL ASHHPKKRAG RKKFRETRHP  60
VYRGVRLRDK GKWVCEVREP RKKSRICLST FPTVEMAARA HDVAALVLRG RSACLNFADS  120
AWQLPVPASA DTKEIQKAAA RAAKAFQPVE SEDVMSGDKK KLRSEEGVWY DEEDIFGIPG  180
LLADMAEGML LSPPKCGGDI YGGEDDGNLD AYTSLWSYSI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02830.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0688270.0JQ068827.1 Eucalyptus grandis trancription factor CBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289653.11e-150dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ932e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A059DIX71e-162A0A059DIX7_EUCGR; Uncharacterized protein
STRINGXP_010061519.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-65C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]