PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02843.1.p
Common NameEUGRSUZ_A02843, LOC104415568
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 344aa    MW: 35580.4 Da    PI: 9.271
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02843.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.62.6e-35801803102
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                       + +++++++hTkv+gR+RR+R++a caar+F+L++eLG++ d++t+ WLl+ a+ ai+e+tgt++ +a ++   +   +   ++ss++++  +
  Eucgr.A02843.1.p  80 PPRRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKNDGETVRWLLEHAENAIIEATGTGTVPAIAVsV-GGALKIPTTPSSSSKEDGD 171
                       66899**********************************************************8888855421.1111111111222222222 PP

               TCP  95 a.kskksqk 102
                       + k+k++++
  Eucgr.A02843.1.p 172 PpKKKRNRA 180
                       212222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.5E-2985164IPR005333Transcription factor, TCP
PROSITE profilePS5136926.30585139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MESTQNRDAD VEDDSRATAA VNRDERSARE ISPPEPPRVR NGFLKEELAN SDPEREALLA  60
PGGGSQVSLS SPRFQRTVAP PRRPSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKN  120
DGETVRWLLE HAENAIIEAT GTGTVPAIAV SVGGALKIPT TPSSSSKEDG DPPKKKRNRA  180
SNSDFFDARE PVSTRSGFAP ITYCSGGGGL SHGLMQLWPV GTPNGGGGGG GGGGGTVFVL  240
PPGSSGQTQP SFLAIPPIFQ VGARPISTST TSPTGGGDGG STEASTVAPS SSSPVAASAV  300
SGSTSSGAPH MLKDFSLEIY DRKELQFLGR SPNSPPSSSC SKP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02843.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025203.10.0PREDICTED: transcription factor TCP19
TrEMBLA0A059DK670.0A0A059DK67_EUCGR; Uncharacterized protein
STRINGXP_010025203.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-57TCP family protein