PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A02857.1.p

Common Name

EUGRSUZ_A02857

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 227aa MW: 25582.4 Da PI: 8.9808

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02857.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	36	107	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.................kapskKlsKaeiLekAveYIksLq 55 r+++h e+Er+RR+++ s + Lr+ lP + + s+K s ++ +Av+YIk+Lq Eucgr.A02857.1.p 36 RKKKHREVERQRRQEMASLCASLRSKLPLEFikvkdlitfrvfalffcACASGKRSTSDHMNEAVNYIKHLQ 107 7899***********************999*************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.62E-7	34	110	No hit	No description
SuperFamily	SSF47459	2.49E-12	34	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.04	35	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-11	36	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-11	36	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MESSSSIFKV VGNRRRKFSV TNYHERAGQD GDHGDRKKKH REVERQRRQE MASLCASLRS 60 KLPLEFIKVK DLITFRVFAL FFCACASGKR STSDHMNEAV NYIKHLQAKI GELGFKRDEL 120 KSIHSLAALG SPCSNSSCLT TFTVNSCCEI VEIVISQSIR EKDFLLSTVL DLLLQQGLDV 180 VSCFSSQAYD KIVHTIRCEL AYGNGSFDLT HLKGELKELL IRKWNS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02857.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061822.1	1e-133	PREDICTED: transcription factor bHLH36
TrEMBL	A0A059DK50	1e-165	A0A059DK50_EUCGR; Uncharacterized protein
STRING	XP_010061822.1	1e-132	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A02857.1.p