PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A02901.1.p

Common Name

EUGRSUZ_A02901

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 276aa MW: 30779.4 Da PI: 8.5657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02901.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	6	27	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F + + H+r+H Eucgr.A02901.1.p 6 VCTICNRRFANGKAMGGHMRSH 27 6*******************99 PP
2	zf-C2H2	12.2	0.00054	229	251	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k+F + L H ++H Eucgr.A02901.1.p 229 FKCPFCDKVFDSGQGLGGHKKVH 251 89********9999998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.827	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.1E-8	7	29	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	176	203	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.38E-9	176	251	No hit	No description
SMART	SM00355	6.7	176	198	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	178	200	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.1E-7	178	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	229	251	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.014	229	251	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-7	229	251	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	231	251	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEKNKVCTIC NRRFANGKAM GGHMRSHLAK LPLPPKQPDV QTKRAPVPAL SSSSLHPDRN 60 EATLKDFRGS PKIYLPHDRS ANSESSFVAS TDPALHDKGS EAESLRNPKG KRSSRCYVAL 120 CLLMLLRDSW TRKGKEVVQE AVDDELAEED EKDDEDDGDD ESFNATLANH RPRPKYWCET 180 CNKVFRSYQA YGGHKASHSH KRMKVLDSRE KEGGDGGAKT KTLTDKRLFK CPFCDKVFDS 240 GQGLGGHKKV HFFNTAVSKS NINNNDDDAE NKVGES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02901.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025302.1	0.0	PREDICTED: zinc finger protein ZAT9
TrEMBL	A0A059DJ27	0.0	A0A059DJ27_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010025302.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16232	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	9e-27	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Eucgr.A02901.1.p