PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00129.1.p
Common NameEUGRSUZ_B00129
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 862aa    MW: 95283 Da    PI: 8.1018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.41.2e-20769849186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+ +e+++Li++r +++ +++  k +++lWee+s ++   g++rsp qCk+ w +l ++y++ k ge++r     +++pyf++++
  Eucgr.B00129.1.p 769 KWKPEEIKELIKLRGQLHGKFQVVKGRMALWEEISTNLLGDGITRSPAQCKSLWTSLVQKYEQSKSGERSR-----TSWPYFEEMD 849
                       7********************************************************************97.....36*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.102.3E-6649299IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.52E-7150464IPR001279Metallo-beta-lactamase
SMARTSM008497.0E-2262259IPR001279Metallo-beta-lactamase
PfamPF127063.5E-1174209IPR001279Metallo-beta-lactamase
PfamPF075211.8E-6407436IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.2762826IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.1E-6763828IPR009057Homeodomain-like
PfamPF138372.6E-18767851No hitNo description
CDDcd122031.97E-19768833No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MCMVLSLLGT HRSKIPRKKS GRMEGAGKSM EDSVKRKMEQ FYEGSNGPPL RVLPIGGLGE  60
IGMNCMLVGN FDRYILIDAG VMFPDYDEIG VQKIIPDTTF IRRWSHKIEA VVITHGHEDH  120
IGALPWVIPA LDSRTPIFAS SFTMELIKKR LKENGIFVPS RLKVFRTKKK FMAGPFEIEP  180
LTVTHSIPDC CGLVLRCGDG TIFHTGDWKI DESPLDGNVF DRESLEQLAK EGVTLMMSDS  240
TNVLSPGRTT SETSVADALL RHISTAKGRV ITTQFASNIH RLGSVKAAAD LMGRKMVLVG  300
MSLRTYLDAA WKDGKASIDP STLIKVEDID AYAPKDLLIV TTGSQAEPRA ALNLASYGSS  360
HSLKLNKEDV ILYSAKVIPG NESRVMKMMN RLADIGSTVV MGRNSGLHTS GHGYREELDE  420
VLKIVKPQHF VPIHGELLFL KEHELLGKST GIHHTTVIKN GEMLGVSHLR NRRVLSNGFI  480
SLGKENLQLM YSDGDKAFGT STELCVDERL RIASDGIVVV SMEILRPQNV DGVVGGSLKG  540
KIRITTRCLW LDKGKLLDAL HKAAHAALSS CPVNCPLAHM ERTVSEVLRK MVRKYSSKRP  600
EVIAIAVENP DAVLSHEIDN RLSGKSHVTF GFSALKKMVD SSPKKTKSSK RQVEDGNSHY  660
YSEKYSERSS EVEDIEDRSF LHEENTPTTS SDAAETQTAS PSSDDLDDSW KSCLTSSSVD  720
KLARDVNGSS QINVSELKSI EDGTESNGED SLEMSTTQAK HSKPLKRNKW KPEEIKELIK  780
LRGQLHGKFQ VVKGRMALWE EISTNLLGDG ITRSPAQCKS LWTSLVQKYE QSKSGERSRT  840
SWPYFEEMDE ILSVVEATTS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-845060819560RIBONUCLEASE J
5a0t_B3e-845060819560RIBONUCLEASE J
5a0v_A3e-845060819560RIBONUCLEASE J
5a0v_B3e-845060819560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00129.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045503.20.0PREDICTED: uncharacterized protein LOC104434227 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A059CYB10.0A0A059CYB1_EUCGR; Uncharacterized protein
STRINGXP_010045503.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95392634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]