PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B00161.3.p

Common Name

EUGRSUZ_B00161, LOC104417216

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 459aa MW: 48572.4 Da PI: 5.1524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B00161.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2e-12	154	176	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++ +tGtCk+G++CkF+H+ Eucgr.B00161.3.p 154 EDCSYYIKTGTCKFGSNCKFNHP 176 89********************9 PP
2	zf-CCCH	24.4	5.2e-08	200	224	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ G Ck+G C+F+H++ Eucgr.B00161.3.p 200 QTECKYYLNKGGCKFGKACRFNHSR 224 568********************95 PP
3	zf-CCCH	34.3	4.1e-11	245	270	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f++rtG Cky ++C+++H++ Eucgr.B00161.3.p 245 GEKECPFYMRTGSCKYAANCRYNHPE 270 7899********************96 PP
4	zf-CCCH	26.7	9.3e-09	345	371	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Ck+ ++Ck++H++ Eucgr.B00161.3.p 345 PGQPDCSYFLKTGDCKFKSNCKYHHPK 371 5789*********************96 PP
5	zf-CCCH	33.4	7.4e-11	393	417	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G+ CkF H++ Eucgr.B00161.3.p 393 QNVCLYYSRYGICKFGPACKFDHPE 417 568********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.746	150	178	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-5	150	177	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-6	150	178	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-9	154	176	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-5	156	175	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	197	224	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	197	225	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.9E-6	200	224	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	200	226	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	203	224	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-6	243	270	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.197	243	271	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.2E-8	245	270	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-5	245	271	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	249	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-4	344	371	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.568	344	372	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-6	346	371	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	349	373	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	387	415	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-5	390	417	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.474	390	418	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-8	393	417	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MITLFSRILG GKATADGPTM ATPPDHGGAG AGDGDGACPD APPQPAAEPD PPPSDPDRAA 60 EELWRLDVGG ASEPLVEEEG GGGGGDGGGG GAAEEGSGAP GSEDGGDGGG GGGGKSGGES 120 DGGEKGEDGD SESDDEKREE RRKFNKYPVR PEAEDCSYYI KTGTCKFGSN CKFNHPVRRK 180 NQVAKDKMKE KEEPKERVGQ TECKYYLNKG GCKFGKACRF NHSRPKTFVP PYQGLNFLGL 240 PIRPGEKECP FYMRTGSCKY AANCRYNHPE PSAGGGDPPS EYGNGGSASL QSASQFPVAS 300 WSSPGTLNDA APFVPVMYSP THAVSSHNAE WNGYQMVIDE FPERPGQPDC SYFLKTGDCK 360 FKSNCKYHHP KDRISKSPPV VLSDKGLPLR PDQNVCLYYS RYGICKFGPA CKFDHPEHLT 420 SSTISELDQP SSIGDSATSD GPLMNGTRNS SEAIQQSV*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MITLFSRILG GKATADGPTM ATPPDHGGAG AGDGDGACPD APPQPAAEPD PPPSDPDRAA  60
EELWRLDVGG ASEPLVEEEG GGGGGDGGGG GAAEEGSGAP GSEDGGDGGG GGGGKSGGES  120
DGGEKGEDGD SESDDEKREE RRKFNKYPVR PEAEDCSYYI KTGTCKFGSN CKFNHPVRRK  180
NQVAKDKMKE KEEPKERVGQ TECKYYLNKG GCKFGKACRF NHSRPKTFVP PYQGLNFLGL  240
PIRPGEKECP FYMRTGSCKY AANCRYNHPE PSAGGGDPPS EYGNGGSASL QSASQFPVAS  300
WSSPGTLNDA APFVPVMYSP THAVSSHNAE WNGYQMVIDE FPERPGQPDC SYFLKTGDCK  360
FKSNCKYHHP KDRISKSPPV VLSDKGLPLR PDQNVCLYYS RYGICKFGPA CKFDHPEHLT  420
SSTISELDQP SSIGDSATSD GPLMNGTRNS SEAIQQSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B00161.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026837.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2
Swissprot	Q9STM4	1e-121	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A059CXL3	0.0	A0A059CXL3_EUCGR; Uncharacterized protein
STRING	XP_010026830.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-118	C3H family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B00161.3.p
Entrez Gene	104417216

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]