PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00366.1.p
Common NameEUGRSUZ_B00366, LOC104418587
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 197aa    MW: 21613.8 Da    PI: 9.8836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00366.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-091767654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
               HLH  6 nerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                      + +Er+RR +++s  ++L +l+P+ ++ ++p+  ls  +  e+A  YI +L
  Eucgr.B00366.1.p 17 KTVERNRRIHMKSLCFKLASLVPShQPrSTPKDMLSQQDQIEQAAAYIAQL 67
                      679*********************6558888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.0261167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-91682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-91788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-61867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-41971No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKKKSSSSSD SIKPDRKTVE RNRRIHMKSL CFKLASLVPS HQPRSTPKDM LSQQDQIEQA  60
AAYIAQLKEK VDMLKAKKEL AVARLDVSRR RGGGECGPAF DGAAARQASA LPFVSIRDWD  120
SGVEVTLISG CGASKNFMLY EVIGILEEEG AEVVSASISN IGDKVFYTLH AQVRLSRVGV  180
ETSRVSQRLH ELVYSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00366.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028270.11e-143PREDICTED: transcription factor ORG3
TrEMBLA0A059CZ331e-142A0A059CZ33_EUCGR; Uncharacterized protein
STRINGXP_010028270.11e-142(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.13e-31bHLH family protein