PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B00470.1.p

Common Name

EUGRSUZ_B00470, LOC104419544

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 243aa MW: 26342.3 Da PI: 5.2093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B00470.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	2.9e-05	38	85	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r + erE++ R+++N+ f+ L l + ++ + Ka+iL +A + +k Eucgr.B00470.1.p 38 KRIHKAEREKQKREHLNELFQDLANALELN----QQNNGKASILCEAARLLK 85 688899*********************998....577888889988887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-10	35	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.83E-5	35	86	No hit	No description
PROSITE profile	PS50888	10.849	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-7	37	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MVSETTTSSG DNSNGAAEAS LSAGRSSPCK KTQGKVPKRI HKAEREKQKR EHLNELFQDL 60 ANALELNQQN NGKASILCEA ARLLKEIFGQ IEDLKKENVA LVSESRYVTV EKNELKEENS 120 ALEAQVEKLQ SELRARVAES KPDLNAPPPE CTQPAGDAAG LATVEQPLQQ THAVFIVPLQ 180 PDISSYPVHA PHVSKPHPRY PTSADSWPSQ LLGDQAPWRN ELPLCGGDNG RSNEETGPDN 240 GL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B00470.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029542.1	1e-178	PREDICTED: transcription factor bHLH47
Swissprot	Q9SN74	4e-63	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A059CZD9	1e-177	A0A059CZD9_EUCGR; Uncharacterized protein
STRING	XP_010029542.1	1e-178	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	6e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B00470.1.p
Entrez Gene	104419544

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]