PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00572.1.p
Common NameEUGRSUZ_B00572, LOC104420340
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 499aa    MW: 56397.6 Da    PI: 8.4247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00572.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001288108323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C  Cg+ F ++  L  H+++H
  Eucgr.B00572.1.p  88 CRECGRGFQSWKALFGHMKRH 108
                       ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.7931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.63E-8931No hitNo description
PROSITE profilePS501579.806936IPR007087Zinc finger, C2H2
PfamPF139121.7E-6932IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4931IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-881108No hitNo description
SMARTSM003550.03386108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.36786113IPR007087Zinc finger, C2H2
PfamPF139121.3E-588110IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139121.2E-11327352IPR007087Zinc finger, C2H2
SMARTSM003550.033328350IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.44E-8328350No hitNo description
PROSITE profilePS5015711.074328355IPR007087Zinc finger, C2H2
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-8406433No hitNo description
SMARTSM003550.59411433IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-11411433IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429411438IPR007087Zinc finger, C2H2
PROSITE patternPS000280413433IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEEDREFQHV CKICSKSFHC GRSLGGHMRS HLIDNEPVET DENLNLDTSK LLSMTAGYGL  60
RENPKKTWKG SDFSEETSVS VSVRERFCRE CGRGFQSWKA LFGHMKRHSE KEKVSRSLGG  120
GDSYDQKQLS RDGQSKSKEA TILYRRRRSE RRKRHMARAG AANSSSLSFA TASSSASEID  180
QQEQEEVAMC LVMLSRDVKN GSSLWGCEKE AQMKMKDLEE KSNLETGTSG IDDSQFDNRI  240
ADICFLANSR HWHKMNLLAD SKQFKKEVQF QSEAVTDHAR LQLGKTDSSK RKLTSSYDPE  300
LKVNLPQKWD ADNLDSQILH SPVKRSRFQC TTCNKTFHSY QALGGHRASH KKAMPTLASE  360
IKSNDNGIEM AISPDPTVDV KPLKLRKPES TSNLDKEVVL RNDLKIKSKE HECPICYKVF  420
LSGQALGGHK RSHLLREPGI KKEEPISGIP NPIPEIREFL DLNLPAPLDE EERGHVGFTS  480
WWLERNYNPE ALIGLVSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00572.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030507.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A059D0E50.0A0A059D0E5_EUCGR; Uncharacterized protein
STRINGXP_010030507.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-24C2H2-like zinc finger protein