PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00633.1.p
Common NameEUGRSUZ_B00633
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 28545.4 Da    PI: 7.9023
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00633.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRrng+lKKA+ELS LCdaeva+iifss+gklyey+s
  Eucgr.B00633.1.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLYEYCS 59
                      79***********************************************96 PP
2K-box89.37.1e-30801746100
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       + s +  +++s++qe+ +Lk++ e L ++qR+llGedL+sL+ keL++Le+qLe+slk+iRs+K++ +l+q+ +lq++e+ l e+nk L++kl
  Eucgr.B00633.1.p  80 NPSRSIDETQSSYQEYLRLKARAEVLLQSQRNLLGEDLGSLDSKELEHLESQLESSLKNIRSTKTQSMLDQLFNLQNREQVLLETNKILSRKL 172
                       445677889***********************************************************************************9 PP

             K-box  99 ee 100
                       ee
  Eucgr.B00633.1.p 173 EE 174
                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.249161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.16E-44278No hitNo description
SuperFamilySSF554554.45E-34280IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2385172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.84888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRNGLLK KAYELSLLCD AEVALIIFSS RGKLYEYCSS  60
SSMMKTLERY QKCSYGAQLN PSRSIDETQS SYQEYLRLKA RAEVLLQSQR NLLGEDLGSL  120
DSKELEHLES QLESSLKNIR STKTQSMLDQ LFNLQNREQV LLETNKILSR KLEEVSPQIP  180
FQLAWEVGGQ GGGGGDGGGG GGGGIPFSLF PPQSEGFFNP MDGNLSLQIG YNPTCLDEMN  240
ASVSSQNVAG FIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-249017219101Developmental protein SEPALLATA 3
4ox0_B4e-249017219101Developmental protein SEPALLATA 3
4ox0_C4e-249017219101Developmental protein SEPALLATA 3
4ox0_D4e-249017219101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00633.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717624.11e-141PREDICTED: developmental protein SEPALLATA 1, partial
SwissprotQ8LLR21e-112MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A059CZH70.0A0A059CZH7_EUCGR; Uncharacterized protein
STRINGXP_010045613.11e-170(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.14e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]