PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00645.1.p
Common NameEUGRSUZ_B00645
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 598aa    MW: 65052.4 Da    PI: 8.2239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00645.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13269307244
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 
                       r +h++ E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L
  Eucgr.B00645.1.p 269 RSKHSATEQRRRSKINDRFQTLRSLIPNS----DQKRDKASFL 307
                       889*************************9....8999**9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-19264307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-12266310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.446267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10269307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-10269307No hitNo description
SMARTSM003530.0011273355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-19340368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MMELPQPRPF GTEARKATHD FLSLCSHSTL HHQDPRQPPS QDSFLKTHDF LGKTAAKEEA  60
TSEISSSLER PPPPAPPGPP PSVPPPQSVE HVLPGGIGTY SISHISYFNN QNPPKPEATI  120
YTVAQASSTD RTDENSNCSS YTNSGFTLWE ESAAKKGKTG KENVPSASVR EAEVKLGPWP  180
ASERPSHSSS NNNHRNSFSS LSSSQPSGAK NKSFMDMIRS AKSGSNQEDE LDDDDGEFLL  240
KKETSPIPKG ELRVKVDGKS SDQKANTPRS KHSATEQRRR SKINDRFQTL RSLIPNSDQK  300
RDKASFLLEV LGHSFCSFFP SFLPDRRNLI ILIDEGTAFI QVIEYIQYLQ EKVTNYEGSF  360
QGWSQEPANM MPLRNGQRPT DNYVDQSRNI TSGSSPALVF AAKVDENNIA MAPAVFRKAK  420
NPLEPEMGSV TAFKSVEHHP GMTNRAVPFP MSLQPNISNC VRGSGAVARG DPNLENNASQ  480
PLTQISRIKS LTNECSASTD KLKEEELTIE GGTISISNVY SQGLLNRLTQ ALQSSGVDLS  540
QASISVQIDL GKQANGRNAA SSSLPKDTEA RNQGVTRPRA AGEIADPALK KLKAGKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00645.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031175.10.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A059D0L80.0A0A059D0L8_EUCGR; Uncharacterized protein
STRINGXP_010031175.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-99bHLH family protein