PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00666.1.p
Common NameEUGRSUZ_B00666
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 208aa    MW: 23150.9 Da    PI: 10.2214
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00666.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-151864353
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                      + GVr+++ +grWvAeI+d +    + r +lg+f +aeeAa a++ a+  l
  Eucgr.B00666.1.p 18 FLGVRQRP-SGRWVAEIKDST---LKLRLWLGTFNSAEEAALAYDSAAWLL 64
                      67******.7*********32...35*******************998555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-291774No hitNo description
Gene3DG3DSA:3.30.730.107.3E-271774IPR001471AP2/ERF domain
PROSITE profilePS5103220.0471774IPR001471AP2/ERF domain
SMARTSM003804.7E-321780IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-191875IPR016177DNA-binding domain
PRINTSPR003674.8E-71829IPR001471AP2/ERF domain
PfamPF008471.1E-92061IPR001471AP2/ERF domain
PRINTSPR003674.8E-74056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRKNIKRRAK GDDAMRRFLG VRQRPSGRWV AEIKDSTLKL RLWLGTFNSA EEAALAYDSA  60
AWLLRGRNAK TNFPCHQLIG NHPEVNCSFV GQHPKVDQIL QHANMKQQQA RSSSSSVLNS  120
FLNHPWPDRN RRSAGGSKDV NTLVQETIVC SPASPKEGSD RCGIQENESR GLSLFGSSKV  180
YSSVFVAPSF SSSTHQDERG QYDFQEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1417811479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00666.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031405.11e-155PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A059CZ691e-153A0A059CZ69_EUCGR; Uncharacterized protein
STRINGXP_010031405.11e-154(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-17related to AP2 11