PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00669.1.p
Common NameEUGRSUZ_B00669, LOC104421251
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 157aa    MW: 17358.6 Da    PI: 4.4131
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00669.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB77.42.1e-241196388
             NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                      ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se++d c+re+++ti+++ +l al  lGf +y+e++ +  +
  Eucgr.B00669.1.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYE 96
                      6899***************************************************************************9865443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-398140IPR009072Histone-fold
SuperFamilySSF471133.06E-3512142IPR009072Histone-fold
PfamPF008081.9E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND  60
VCNREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKH ETMQDSLKGG KWSNGAEMTE  120
EALLAEQQRM FAEARARMNG GAAVPKQADV DSNVES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-351213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00669.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031455.11e-113PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_010031462.11e-113PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018723264.11e-113PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018723265.11e-113PREDICTED: protein Dr1 homolog isoform X1
SwissprotP495925e-94NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A059D0391e-112A0A059D039_EUCGR; Uncharacterized protein
STRINGXP_010031447.11e-113(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-96nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]