PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00669.2.p
Common NameEUGRSUZ_B00669
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 127aa    MW: 14003.6 Da    PI: 4.3844
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00669.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.85.3e-1318664088
             NF-YB 40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                       efi +v+se++d c+re+++ti+++ +l al  lGf +y+e++ +  +
  Eucgr.B00669.2.p 18 KEFINLVSSESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYE 66
                      69****************************************9865443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.54E-2018112IPR009072Histone-fold
PfamPF008083.7E-71849IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.3E-2318110IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKEF INLVSSESND VCNREEKRTI APEHVLKALE VLGFGEYIEE  60
VYAAYEQHKH ETMQDSLKGG KWSNGAEMTE EALLAEQQRM FAEARARMNG GAAVPKQADV  120
DSNVES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-201910548133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00669.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031455.13e-83PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_010031462.13e-83PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018723264.13e-83PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_018723265.13e-83PREDICTED: protein Dr1 homolog isoform X1
SwissprotP495926e-64NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A059CZL42e-88A0A059CZL4_EUCGR; Uncharacterized protein
STRINGXP_010031447.11e-82(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.32e-68nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]