PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00699.1.p
Common NameEUGRSUZ_B00699, LOC104421453
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 384aa    MW: 42610.2 Da    PI: 6.9135
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00699.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.71.2e-431292742133
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssssa 82 
                       + kkdrhski+T++g+RdRR+Rls+e+a++fFdLqd+LGfdk+skt+eWLl  +k aikel ++         +s+s sec   +        
  Eucgr.B00699.1.p 129 TSKKDRHSKIYTARGPRDRRMRLSLEVAREFFDLQDMLGFDKASKTVEWLLLHSKSAIKELSRSaaktnsctaGSTSTSECdvaS---GI--- 215
                       689*************************************************************655555555333335553321...22... PP

               TCP  83 snsssg............kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                            +             ++k    ++k +q++ +s+  la+esr+karararert ek  ++
  Eucgr.B00699.1.p 216 -----DeaagngdhsasvTQEKPPIkEKKTRQSRRNSFYLLARESRKKARARARERTVEKLWMR 274
                       .....12222233345554444444345555556666788888*****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-43129271IPR005333Transcription factor, TCP
PROSITE profilePS5136935.758131189IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.763253270IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFPSNSNGID PISIWDGLTI LHKPLSSDAI PNSKQEDHLV SLFNIPSPFL HYYEDDSSSF  60
LEHGLDLLLP QPQQPASSDD AAVVAHTLAN MVDLNNNVNA NEASARGGGG GGNFKKNHST  120
PDPVPRKRTS KKDRHSKIYT ARGPRDRRMR LSLEVAREFF DLQDMLGFDK ASKTVEWLLL  180
HSKSAIKELS RSAAKTNSCT AGSTSTSECD VASGIDEAAG NGDHSASVTQ EKPPIKEKKT  240
RQSRRNSFYL LARESRKKAR ARARERTVEK LWMRRLDAPK PCSEAMKTDL NESSLYETCE  300
ESGIQGSNNV KAASNFLAQS EEPQEEKNLG TTGQTVDDSL AISDRWSPTF SFNNFTSTAI  360
SQEHEFRELH LFVKPWEAYN NSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-13136189154Putative transcription factor PCF6
5zkt_B5e-13136189154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00699.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7725021e-115JQ772502.1 Actinodium cunninghamii cycloidea-like protein 1a (CYC1A) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031709.10.0PREDICTED: uncharacterized protein LOC104421453
TrEMBLA0A059D0740.0A0A059D074_EUCGR; Uncharacterized protein
STRINGXP_010031709.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-27TCP domain protein 12