PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00721.1.p
Common NameEUGRSUZ_B00721, LOC104421639
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 462aa    MW: 51527.5 Da    PI: 5.4258
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00721.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.9e-091659340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      +r C+ + + +++++C+ ++ +lC+ C ++ H+       H++v
  Eucgr.B00721.1.p 16 ARACDSCLRRRARWYCTADDAFLCQGCDSSVHSAnqlarrHERV 59
                      578*****************************657788888876 PP
2CCT66.38.6e-23415457143
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                       Rea+++RY+eKr+tR F+KkirY++RK +Ae+RpR+KGrFvk+
  Eucgr.B00721.1.p 415 REARVSRYREKRRTRMFSKKIRYQVRKLNAEKRPRMKGRFVKR 457
                       9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.8E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0211461IPR000315B-box-type zinc finger
PfamPF006431.3E-71659IPR000315B-box-type zinc finger
CDDcd000216.11E-101761No hitNo description
PfamPF062037.3E-18415457IPR010402CCT domain
PROSITE profilePS5101716.093415457IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MITERKAAKA FGAKTARACD SCLRRRARWY CTADDAFLCQ GCDSSVHSAN QLARRHERVR  60
LGTASSLSSR IGCGGGAKLP SSAPPQFVDN SAAPAWHGGF TRKARTPRIS KKILLRSQAR  120
NNHCEDDKVS KLNLTRDDNF IDHNLVPELG NDLGGSPNEN YNEEDEEQFL YRVPVFNPLA  180
SEMIGDEMAD LLRVGDDVLR DGSFDLPSDM DLAEFAADVE NLLSNDNEGG TEEDFACDVK  240
DLGVLLECKE EGHHEEGVIG VCFDRRDQGV VKVEGLVGGG ALDCHMEIGF DATGAGDDVD  300
WDFDFYNDDH VQSLGIEEKE DEENKMRTVV SGDAEEQATM KKKRKMLLRL NYEGVMAAWA  360
SQGSPWTTGD RPDFELDEGW PNSNMGTASH SLKYHLPFAE AMGLRAHVGA EDGGREARVS  420
RYREKRRTRM FSKKIRYQVR KLNAEKRPRM KGRFVKRMSF I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425441RRTRMFSKKIRYQVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00721.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8739453e-78KT873945.1 Eugenia uniflora microsatellite Pit75 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031966.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A059CZE40.0A0A059CZE4_EUCGR; Uncharacterized protein
STRINGXP_010031966.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.14e-72B-box type zinc finger protein with CCT domain