PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B00866.1.p

Common Name

EUGRSUZ_B00866, LOC104422141

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 196aa MW: 21931.1 Da PI: 10.5263

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B00866.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.8e-19	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+v+++G g+W++ ++ g+ R++k+c++rw++yl Eucgr.B00866.1.p 13 KGAWSEQEDQKLIDYVQKHGEGNWNSLPKAAGLLRCGKSCRLRWLNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	53.7	4.7e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Eucgr.B00866.1.p 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-24	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.617	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	4.67E-30	11	107	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-15	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-18	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	9.51E-12	15	60	No hit	No description
PROSITE profile	PS51294	26.246	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-25	63	115	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-16	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.11E-11	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MRNPCCDKQK TNKGAWSEQE DQKLIDYVQK HGEGNWNSLP KAAGLLRCGK SCRLRWLNYL 60 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLLSKGI 120 IHRRPSAAKI KSSTEDKTVH QSSAAISIKE KGVSPDGDRL DLKLGVSGGP AKHSKHAQSK 180 EINGGKPYTT LLLFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-30	12	115	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B00866.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032684.1	1e-142	PREDICTED: myb-related protein 308
Swissprot	P81393	1e-71	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A059CZV3	1e-140	A0A059CZV3_EUCGR; Uncharacterized protein
STRING	XP_010032684.1	1e-141	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	5e-73	myb domain protein 6

Link Out ? help Back to Top
Phytozome	Eucgr.B00866.1.p
Entrez Gene	104422141

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]