PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B01225.1.p

Common Name

EUGRSUZ_B01225

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 130aa MW: 14641.9 Da PI: 7.6689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B01225.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.6e-11	73	102	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 ++ +hn+ Er RR+++Ns +++Lr+llP a Eucgr.B01225.1.p 73 KKLNHNASERDRRKKMNSLYSTLRSLLPAA 102 6789************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.41	72	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-9	73	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	73	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-9	73	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.26E-9	73	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MLSFSPSGWP LEGSTSQEQE SYMHRDAYTC YSPPLVHFPF LSPPTPSPLA EQAFDPLGIP 60 FGVVKDEEAT MVKKLNHNAS ERDRRKKMNS LYSTLRSLLP AADQMVIIPM LLSYIFEGLK 120 RAMERIVKH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B01225.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036348.1	1e-47	PREDICTED: transcription factor ORG2
TrEMBL	A0A059D1N4	6e-91	A0A059D1N4_EUCGR; Uncharacterized protein
STRING	XP_010036348.1	5e-47	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B01225.1.p