PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01228.1.p
Common NameEUGRSUZ_B01228, LOC104425381
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 822aa    MW: 91221.2 Da    PI: 6.0779
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01228.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.82e-35153229177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +Cqv++C+ad++e+k yhrrh+vC  +++a++vl++g ++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Eucgr.B01228.1.p 153 RCQVPSCKADIQELKGYHRRHRVCLRCANASAVLLEGDRKRYCQQCGKFHFLSDFDEGKRSCRRKLERHNNRRRRKP 229
                       6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-27147215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.145151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-33152231IPR004333Transcription factor, SBP-box
PfamPF031107.8E-26154228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MEPPPSPSSP HLLPSMDLHA PPLLDGAAAD AADCVWDFGD LLDFTADDAL ISPWDEPPAL  60
DNPASVPSDP DPDPAPEDPP AGGAAPPAAT RVRKRDPRLV CSNFLAGRVP CACPELDAKM  120
AEAEEEEAAA EGLHTKKRAR APRRAGTGQG IARCQVPSCK ADIQELKGYH RRHRVCLRCA  180
NASAVLLEGD RKRYCQQCGK FHFLSDFDEG KRSCRRKLER HNNRRRRKPA DSGSGLVKES  240
QQDIHSEDVG CDDEDGKDTL CLSGQSVEKE ASLEPEDGGA SPLGSAPECQ IISTDSIASA  300
VSRETQMESR KDNSKFALSP SCGDNRSAYS SVCPTGRISF KLYDWNPAEF PRRLRHQIFH  360
WLASMPVELE GYIRPGCVIL TVFIAMPKFM WGKLYEDPIS YINEFILRPG RLLSGRGTMY  420
IFLNDMVFHL KEDETSVTKV EGGFRTPRLH YVHPMVFEAG KPMDIVACGS DLLQPHFRFL  480
ISFAGKYLPC DNGAASSYCG SERGINYNSG HQLYKMHIPC TELNQFGPAF VEVENQSGLS  540
NFIPVLIGNK EVCSEMRMLQ QRVDKSLLNE GPQISDISNV PDSCGAFSQR QATLSEFILD  600
IAWLLKEPAS ENLDHSFSVL EIQRFSSLLS FLMQHDSSTI LEKILQRLDF LMENIELTSE  660
ISSGNNDADI RSFNTQIDQA REFLRKHQSS KRAVLHSEHS RRKEECSHQG FSQNDVLSAV  720
TNANQDMEKG ESYRVELMTG YTYSHKNEAA PLLDVELVMN GNLLKEKPRS RMLLSSVLRS  780
RPTLFAVATV AVCFGVCAVL LHPNKVGEFA VSIHRSLFDR P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-41151234386squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214226RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01228.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036373.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A059D1A40.0A0A059D1A4_EUCGR; Uncharacterized protein
STRINGXP_010036373.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63582644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7