PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01303.1.p
Common NameEUGRSUZ_B01303, LOC104426120
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 115aa    MW: 13050.7 Da    PI: 5.9565
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01303.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.71.6e-5313108297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvt+eas+kc++e+rkt+ngdd++wa+ tlGf++y+ pl+ yl++yr+le
  Eucgr.B01303.1.p  13 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTGEASEKCRKERRKTVNGDDICWAMETLGFDNYAGPLRRYLHRYRDLE 105
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       g+k
  Eucgr.B01303.1.p 106 GDK 108
                       *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-509112IPR009072Histone-fold
SuperFamilySSF471134.66E-3815111IPR009072Histone-fold
PfamPF008082.5E-271882IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-164664No hitNo description
PRINTSPR006152.6E-166583No hitNo description
PRINTSPR006152.6E-1684102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEDNIGSNDG SIKEQDRLLP IANVGRIMKQ ILPPNAKISK EAKETMQECV SEFIGFVTGE  60
ASEKCRKERR KTVNGDDICW AMETLGFDNY AGPLRRYLHR YRDLEGDKAN QDRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4412103192Transcription factor HapC (Eurofung)
4g92_B2e-4412103192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01303.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037376.12e-81PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822489e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A059D1M24e-80A0A059D1M2_EUCGR; Uncharacterized protein
STRINGXP_010037376.17e-81(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]