PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01369.1.p
Common NameEUGRSUZ_B01369
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 19966.5 Da    PI: 4.4681
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01369.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.8e-161254345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      i +   r vt+skRr+g++ KA+ L+ LC+a++av++fs+ gk
  Eucgr.B01369.1.p 12 IADPAARLVTYSKRRKGLFNKASQLCRLCGARAAVLVFSPAGK 54
                      7777889*********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-20261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.74262IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-12424IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-21476IPR002100Transcription factor, MADS-box
PfamPF003191.2E-191158IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-122439IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-123960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGKRRRTEIS KIADPAARLV TYSKRRKGLF NKASQLCRLC GARAAVLVFS PAGKPCSFGE  60
PSADEIIGDY LRHGDCDGDV TPPMGLTQWG DWMETEWEAC ATEEDLEALI LKYEAIRDCA  120
RRRLKSLEEA SRVEVGGGES RILSEEEIDA LFESLGRCPA LSDLLTDGDG DGLLSPPENS  180
ADG
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01369.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046031.11e-124PREDICTED: protein MADS AFFECTING FLOWERING 5-like
TrEMBLA0A059D1D11e-129A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010046031.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3499522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-20AGAMOUS-like 61