PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01407.1.p
Common NameEUGRSUZ_B01407, LOC104426814
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 430aa    MW: 46732.9 Da    PI: 8.4207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-114671126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ++++ C+++ rtG C++G++C+F+H+
  Eucgr.B01407.1.p 46 PGEPDCSYYIRTGLCRFGATCRFNHP 71
                      5789*********************8 PP
2zf-CCCH38.91.5e-1293117327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tGtCk+G++CkF+H++
  Eucgr.B01407.1.p  93 QPECQYYLKTGTCKFGATCKFHHPR 117
                       799********************96 PP
3zf-CCCH35.22.1e-11141163527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C +++rtG+Ck+G++CkF+H++
  Eucgr.B01407.1.p 141 ECAYYLRTGQCKFGSTCKFHHPQ 163
                       6********************97 PP
4zf-CCCH37.92.9e-12297323127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+f+++tG Ck+G+ C+F+H++
  Eucgr.B01407.1.p 297 PGQPECQFYMKTGDCKFGAVCRFHHPR 323
                       5789*********************96 PP
5zf-CCCH40.25.7e-13343369127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++lC f++r+G+Ck+G++CkF H++
  Eucgr.B01407.1.p 343 PGEPLCIFYSRYGICKFGPSCKFDHPM 369
                       589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2954573IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-54572IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-74771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-45171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35690118IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-690117IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197136164IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596296324IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6296323IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709342370IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7342369IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5345370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4347367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAFDAGIPMP RGSVADGPSL SPSDAMWQMT LRSNETIESG PYPERPGEPD CSYYIRTGLC  60
RFGATCRFNH PSDRKLAIAN ARMKGEYPER VGQPECQYYL KTGTCKFGAT CKFHHPRDKA  120
GIAGKVALNI LGYPFRPNEM ECAYYLRTGQ CKFGSTCKFH HPQPTNMMVS LRGSPVYPSV  180
QSPTTPTQQS YPGVTSWSRA SFIPSPRWQG PSSYTPLIVP QGMVSIPGWN AYSGQLGSVS  240
SSDSQLIMMG QSQIFGSSGQ SDSVNTGSPG AFSSYQSGSM PVGFYALQRD NIFPERPGQP  300
ECQFYMKTGD CKFGAVCRFH HPRERLLPAP DCLLSPIGLP LRPGEPLCIF YSRYGICKFG  360
PSCKFDHPMG ILNNLSASSP SGAPVRRMLA SSSGTAALVL SESGPGNPRR LSLSETRQIP  420
SDDNIDSDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01407.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038283.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A059D2740.0A0A059D274_EUCGR; Uncharacterized protein
STRINGXP_010038283.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-174zinc finger protein 1