PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01460.1.p
Common NameEUGRSUZ_B01460
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 680aa    MW: 74040.2 Da    PI: 6.6866
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-11222278155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Eucgr.B01460.1.p 222 SIYRGVTRHRWTGRYEAHLWDnTCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 278
                       57*******************4444.2455535555.779999**************98 PP
2AP246.77.7e-15321372155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Eucgr.B01460.1.p 321 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 372
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-18222288No hitNo description
SuperFamilySSF541711.18E-14222288IPR016177DNA-binding domain
PfamPF008471.3E-8222278IPR001471AP2/ERF domain
SMARTSM003802.7E-22223292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11223286IPR001471AP2/ERF domain
PROSITE profilePS5103217.28223286IPR001471AP2/ERF domain
PRINTSPR003673.5E-6224235IPR001471AP2/ERF domain
CDDcd000182.73E-24321382No hitNo description
SuperFamilySSF541711.05E-17321382IPR016177DNA-binding domain
PfamPF008479.6E-10321372IPR001471AP2/ERF domain
SMARTSM003801.5E-33322386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-18322381IPR001471AP2/ERF domain
PROSITE profilePS5103219.045322380IPR001471AP2/ERF domain
PRINTSPR003673.5E-6362382IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDSMNNWLGF SLSSQSQPPL ALPLPFLSHS QGISDPTAVD DGDVSDWRLK RLGGDGGFKA  60
VNSVVDLSAS AMLLAQTPVA DDEQPHNKLD DFLGCNPLSS SSDHDHLHLN HNLNKGDTGS  120
SPSSSMLGLS MIKSWLRTHP PNSNTSTSLA GTEIGAPAQA LSLSTASAGG GGIDHDERQM  180
QTAPPLPPPP PLDSSSTDDT PTTLSADSLP RRSVDTFGQR TSIYRGVTRH RWTGRYEAHL  240
WDNTCRREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGTT TTTNFPINNY DKELEEMKHM  300
TRQEFIASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  360
EAYDIAAIKF RGLNAVTNFD MSRYDVKTIL ESTNLPIGAA AKRLKEAEQS TAAITGHITL  420
GGSHDHHNFV SGSPLGTLWP HTAFKGGTND YGDFLHAQAQ AQAWMSNGNM QNVMHRHHQL  480
PSPYGYGHVQ RAWPCKQEQD DDYCYSNSNT INTTHNFFNH QPSSTNSLLL STTDSSNHNI  540
DSPVSMEHSS SSNSLVYGGG GFNNATPFGH NNHSGLGIPV GTVLASSGIG HHHQNQHAEQ  600
FRVNEAKDND GAVKIIGYGQ QNHIQDDCGH EHYEQGGGYE LGWLPTAVPP TTTTTTLFSS  660
NNCTMHQMAA SPFAVWNDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038601.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A059D2D00.0A0A059D2D0_EUCGR; Uncharacterized protein
STRINGXP_010038601.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-119AP2 family protein