PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01471.1.p
Common NameEUGRSUZ_B01471, LOC104427232
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 486aa    MW: 53601.5 Da    PI: 9.5527
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01471.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05100122123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Eucgr.B01471.1.p 100 FVCEICNKGFQRDQNLQLHRRGH 122
                       89*******************88 PP
2zf-C2H212.20.00055178200123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  Eucgr.B01471.1.p 178 WKCEKCSKIYAVQSDWKAHSKTC 200
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.29E-699122No hitNo description
PfamPF121717.7E-5100122IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949100122IPR007087Zinc finger, C2H2
SMARTSM003550.017100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM00355260143173IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4166199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.29E-6173198No hitNo description
SMARTSM00355170178198IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MFPATMSNST TLSDEASVSS GARVLDFCSF NHNTDTTNKN NQENSLQQQP QQLITTVHNN  60
SPQHQQQKKI RKKRSLPGNP DPDAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RSGKDQVVRK RAYVCPEPTC VHHHPSRALG DLTGIKKHYC RKHGEKKWKC  180
EKCSKIYAVQ SDWKAHSKTC GTREYRCDCG TLFSRKDSFV THRAFCDALA EESARLSASQ  240
LTTVDPNIPL HHRHLHPPPT LFPLPSFLSN PPPQPTTHVS LAPNWDPPQN PSYPPRVHVK  300
PETLRFQVPL LSSQPQLIFQ ERPSHKAMIT TPFQALHGTA AGTSPHLSAT ALLQKATTMG  360
SVATSAIGHH HHHHSARSAS HIASLSVGAD YGAPSVPPEL VKELAASPLE SLGAWRKSDG  420
LTRDFLGLTG EVNAGSGRVN VGDLLGFTKG MELQQAYKRE QSALKISDGF GFADQNNASC  480
FSDLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36174238367Zinc finger protein JACKDAW
5b3h_F5e-36174238367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01471.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038657.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-123IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A059D2J00.0A0A059D2J0_EUCGR; Uncharacterized protein
STRINGXP_010038657.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-107indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]