PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01487.2.p
Common NameEUGRSUZ_B01487, LOC104427410
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 324aa    MW: 33345.4 Da    PI: 6.5161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01487.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10172216554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++ +L++l+P+ +      K + a++L + v+Y+k L
  Eucgr.B01487.2.p 172 HSIAERLRRERIAERIRQLQDLVPSvN------KTDRAAMLDEIVDYVKFL 216
                       99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15165227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.215167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15169227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7172216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-11173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MANNPSDGAS DEFLEHLLGL PNFAAAAEAG LAPGDGTGLS VTAATPMMLQ LGSGDGSGGH  60
GHGHGHGQGH LSALGGGGAG AGGGGGGGGG GYHGAVFPLG LSLEQGKGGF LKPEEASGSG  120
KRYPEEVVDG RASTVKNVFH GQPVPNPVPA APHPPAMRPR VRARRGQATD PHSIAERLRR  180
ERIAERIRQL QDLVPSVNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGA AGAVAPLVTD  240
IPLSSVEEEG GEGGRNQPAW EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA  300
TAIYQTQPPD TSSLVKSESN PPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01487.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038816.10.0PREDICTED: transcription factor UNE12 isoform X2
SwissprotO227681e-131UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A059D3690.0A0A059D369_EUCGR; Uncharacterized protein
STRINGevm.model.supercontig_52.971e-161(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]