PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01541.1.p
Common NameEUGRSUZ_B01541
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 146aa    MW: 16459.4 Da    PI: 9.1153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01541.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-191566256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+G+r+++ +g+++AeIrdps ng  +r +lg+f taeeAa a+++a+ +++g+
  Eucgr.B01541.1.p 15 QYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAACAYDRAAFAFRGH 66
                      6********.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-231574IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-311574IPR001471AP2/ERF domain
CDDcd000181.27E-271574No hitNo description
PROSITE profilePS5103224.1711573IPR001471AP2/ERF domain
SMARTSM003805.8E-351579IPR001471AP2/ERF domain
PfamPF008472.6E-121666IPR001471AP2/ERF domain
PRINTSPR003677.5E-111627IPR001471AP2/ERF domain
PRINTSPR003677.5E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVKKRGSRLQ CDQNQYRGIR RRPWGKFAAE IRDPSRNGAR LWLGTFETAE EAACAYDRAA  60
FAFRGHLAIL NFPNKQQYYA QNDYNVSGHR SYFSASPSLS SSSFSACSSS STELAPAKPS  120
RDAIEFEYLD DKLLEELLMS EINKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-291573563ATERF1
3gcc_A3e-291573563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01541.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045996.11e-101PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D2K51e-103A0A059D2K5_EUCGR; Uncharacterized protein
STRINGXP_010045996.11e-100(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]