PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01624.1.p
Common NameEUGRSUZ_B01624, LOC104434876
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 128aa    MW: 14697.9 Da    PI: 9.7558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01624.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM713.2e-2241194128
               NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                        ++F+Ptde l ++yL++k+ g +l+    i+e+d+++ ePw++   + + e+  y F++ +k   t++r  r++ s +Wk++   +++    
  Eucgr.B01624.1.p   4 LVKFRPTDEHLFTHYLQQKAMGAPLPP-GLIEECDLNSQEPWRIF-DT-TLEQTFYVFTTLRK---TKSRVLRTAGSETWKEQHA-TKISL-- 87 
                       589*********************999.89**************6.32.23456677777766...46799**999*****9977.56766.. PP

               NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                       gelvg kk++ f  gr +++++ +W+m e+++
  Eucgr.B01624.1.p  88 GELVGYKKSFKFQGGRGSSATSGRWIMYEFSM 119
                       79****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7361127IPR003441NAC domain
PfamPF023652.1E-153118IPR003441NAC domain
SuperFamilySSF1019412.09E-235122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MNPLVKFRPT DEHLFTHYLQ QKAMGAPLPP GLIEECDLNS QEPWRIFDTT LEQTFYVFTT  60
LRKTKSRVLR TAGSETWKEQ HATKISLGEL VGYKKSFKFQ GGRGSSATSG RWIMYEFSMC  120
DERVVKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-15111915140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01624.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046032.14e-92PREDICTED: NAC domain-containing protein 2
TrEMBLA0A059D3N18e-91A0A059D3N1_EUCGR; Uncharacterized protein
STRINGXP_010046032.11e-91(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-18NAC domain containing protein 32