PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01750.1.p
Common NameEUGRSUZ_B01750
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 663aa    MW: 75443.3 Da    PI: 8.334
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.93e-2269156189
              FAR1   1 kfYneYAkevGFsvrkskskksk.rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fYn+YAk++GF+vrk k ++s+ ++++it + f Cs++g++++++ + +++  +r  trtgC+a++k   + dg w+++k++leHnH+l
  Eucgr.B01750.1.p  69 NFYNKYAKQTGFRVRKGKPQRSRlNKDTITGKYFLCSCQGHKSKKQIE-KQTLYKRRDTRTGCEANIKCVVS-DGMWKISKVVLEHNHSL 156
                       6******************99961455689999***********9999.99999**************9999.***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1969156IPR004330FAR1 DNA binding domain
PfamPF105513.9E-13267357IPR018289MULE transposase domain
PROSITE profilePS509669.483544580IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEMQKEECCA PKRLNFNSQG ASCSTLPEAI GDEDEAQSTS ANIDGEELVS DLGVPRVGLE  60
FCSEEAVYNF YNKYAKQTGF RVRKGKPQRS RLNKDTITGK YFLCSCQGHK SKKQIEKQTL  120
YKRRDTRTGC EANIKCVVSD GMWKISKVVL EHNHSLEGCL AITHGRADDS CATMTHSTDK  180
TVDEVRTVGE QALVSDVDSS DVPRGTWKIH PMLEHKDTQD LIDHFKNRQI EDPSFFYTAQ  240
VKAASGMANF FWRDSRSKID YEHFGDVLVL DTRTEIKKYG MICAVFWGLN NHRQRIIFGC  300
AFLVDQTVGS LNWLLRSFVE VSCHKPKTII TEVSEEIADA LRVVLPETAH CLQFWSILNG  360
FKNLSTLSDR ASVGNLFRDC VFHVHSQVEF EFKWNSFIGK YKLHENRWFA SLYGMREKWS  420
HAFTKNVFSA GLISIQNNED ARAIFGNLSC KTMTLSQFAQ QCEKMAEHMR RKEFLEDMRC  480
EKISANLQSK NPVEKEAERL YTKPIFNMFQ KELSNILSLS IEEIGGKATL REFKLTEQGS  540
MNIDTVKFDP SNSTLVCSCG KFESVGILCF HALKVLNFMN IFNIPSRYLL KRWTKSAKDS  600
LPLDSPRTGT ARDGGPDNLF MGEFMRQALH VAYMSVNKKR KRKAMAIMKS ALEDIAKVPK  660
TE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1637642KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046141.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A059D3A40.0A0A059D3A4_EUCGR; Uncharacterized protein
STRINGXP_010046141.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1917167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.19e-77FAR1-related sequence 7