PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B01823.1.p

Common Name

EUGRSUZ_B01823, LOC104431535

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 288aa MW: 33157.8 Da PI: 6.2055

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B01823.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	154	178	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H Eucgr.B01823.1.p 154 FYCDLCNKQYKLAMEFEAHLSSydH 178 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	4.3E-17	57	102	IPR000467	G-patch domain
PROSITE profile	PS50174	16.135	59	104	IPR000467	G-patch domain
Pfam	PF01585	6.7E-15	60	100	IPR000467	G-patch domain
SuperFamily	SSF57667	1.39E-5	151	185	No hit	No description
Pfam	PF12171	1.6E-5	154	181	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	156	178	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MNYRWRNSSA QDAGPDEGEK DAVDYDFRED FRLPINHRPT ENVDLDDVEQ ASLDTHLSSS 60 NIGFRLLQKM GWSGKGLGKD EQGITEPIKS GMRDPKLGIG KQEEDDYYTS EENIQRRKLE 120 IEIEETEEQL KKREVIAERE HKIQNEVKEI RKVFYCDLCN KQYKLAMEFE AHLSSYDHNH 180 RKRFKEMREM HGASSRDDRQ KREQQRQERE MAKIADARKQ KQQQEEPGSS PIPAPTISAT 240 ALADQDQRKT LKFGFSSKSG TSKTSVKSAL KKPKVVASVF GNDSDEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B01823.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010042465.1	0.0	PREDICTED: G patch domain-containing protein 8 isoform X2
TrEMBL	A0A059D487	0.0	A0A059D487_EUCGR; Uncharacterized protein
STRING	XP_010042458.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12667	5	6

Link Out ? help Back to Top
Phytozome	Eucgr.B01823.1.p
Entrez Gene	104431535