PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01825.1.p
Common NameEUGRSUZ_B01825, LOC104431553
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 661aa    MW: 70035.5 Da    PI: 5.285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01825.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-16429475455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  Er+RRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Eucgr.B01825.1.p 429 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 475
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.64E-17421479No hitNo description
SuperFamilySSF474596.94E-21422489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-21422485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13429475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MPLFELFRRA QEKLNSRQDK GQSCSADLSF IPEDGFVELI WENGQVVMQG QSSRPKKSQP  60
GFGLLSEFTS QSPWISDKDV GNGAASNSKK SEAEPDSGLS EFPMSSPPRE MCLTHDEDIV  120
PWFSCPINEP LQNDYCSDFL PELSGVPVNE LSNLYSFDST QKSNNKEVGP AGVNGAKVPS  180
AADVEINGMG MNTALPSLQQ GVMDAMGSSK CGITYDSTFG DFSRLPRLAV GSTSEKGQAK  240
DATPSAKNSN FINFSHFARV ATPSHANVEN NARASGSGSL ISDRAARKEK CSSTNDSIMA  300
DNLASNLSVC PRTEASSNCQ VQREQLMVAS KPLICQGDAL KNDKSADQSC CASSSKGSPD  360
NEKMTELAAS TSSASTSDAP SCSLKRKCPS TNNSEALAED VDEDSVGVKK AAAAAARSTS  420
SKRSRAAEVH NLSERKRRDR INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQM  480
MSMANGLYMP PMMFPTAIQR IHPSQMAQFA PMGIGMGLGM GMVGVNCGTH VPVPHVSAST  540
ALHSTAAPNF PLMGLPCQGL PMSMPCLSSL VPFPGVPPLK PGTGSNTSAF VGPGTMENTD  600
AAIPSSVKES TQNVNSASCI TNHTSTQFQA RNGDFQKPTS VQAACPDSDI NVGGVADSVD  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433438ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01825.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018723934.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A059D3610.0A0A059D361_EUCGR; Uncharacterized protein
STRINGXP_010042473.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-51phytochrome interacting factor 3