PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01940.1.p
Common NameEUGRSUZ_B01940, LOC104432303
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 161aa    MW: 18178.1 Da    PI: 4.934
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.72.3e-50398297
             NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96
                       eq+r+lPianv+rimk++lP  akisk+ak+t+qec++efi+fvt+easd+c++e+rkt+ngdd++wal++lGf++y+e++  yl+kyre e+e
  Eucgr.B01940.1.p  3 DEQERLLPIANVGRIMKEILPPSAKISKEAKQTIQECATEFIGFVTGEASDRCHKENRKTVNGDDICWALSNLGFDNYAEAMARYLHKYREYERE 97
                      69*******************************************************************************************99 PP

             NF-YB 97 k 97
                      k
  Eucgr.B01940.1.p 98 K 98
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-502134IPR009072Histone-fold
SuperFamilySSF471139.54E-405134IPR009072Histone-fold
PfamPF008082.8E-25872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-173654No hitNo description
PRINTSPR006155.4E-175573No hitNo description
PRINTSPR006155.4E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVDEQERLLP IANVGRIMKE ILPPSAKISK EAKQTIQECA TEFIGFVTGE ASDRCHKENR  60
KTVNGDDICW ALSNLGFDNY AEAMARYLHK YREYEREKNR SNSSNNNQTL ATSSGDNKDD  120
GELHLRIEEQ QVRQVETHQS LAPLEFQFID KGQSSTSEPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-39293697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01940.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043071.11e-118PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040271e-53NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A059D4G71e-117A0A059D4G7_EUCGR; Uncharacterized protein
STRINGXP_010043071.11e-118(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-51nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]