PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02144.1.p
Common NameEUGRSUZ_B02144, LOC104435269
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 251aa    MW: 27681.4 Da    PI: 9.8589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02144.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+  ++q+G  +W++ +r  g+ R++k+c++rw +yl
  Eucgr.B02144.1.p 14 KGPWTPEEDQILISHIHQFGHSNWRALPRQAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding50.84e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T +E + ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Eucgr.B02144.1.p  67 RGNFTDDERDTIIQLHQVLGNR-WSAIASRLP-GRTDNEIKNFWHTHL 112
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.012961IPR017930Myb domain
SuperFamilySSF466896.36E-3010108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
CDDcd001674.17E-121661No hitNo description
PROSITE profilePS5129424.70162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2665115IPR009057Homeodomain-like
SMARTSM007179.0E-1666114IPR001005SANT/Myb domain
PfamPF002499.0E-1567112IPR001005SANT/Myb domain
CDDcd001673.79E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARTPCCEKM GMKKGPWTPE EDQILISHIH QFGHSNWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDVKRGNF TDDERDTIIQ LHQVLGNRWS AIASRLPGRT DNEIKNFWHT HLKKRVPHSL  120
PNSTPFTINP TRCTTLDPSF QNPTSAPPTQ KFQEPLTTSE TESGPSIAVQ ANIESSSQAV  180
PSSRASQKLE KTKKDLIAGS APAFPMAAGS QCGGQGVLSM KGDKDMEFWY SLLVRAGDGH  240
HQVGNAAGTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
1h8a_C6e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02144.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046353.10.0PREDICTED: myb-related protein Myb4
SwissprotQ9SJX84e-73MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A059D4820.0A0A059D482_EUCGR; Uncharacterized protein
STRINGXP_010046353.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-74myb domain protein 15
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]