PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02330.1.p
Common NameEUGRSUZ_B02330
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 645aa    MW: 72455.8 Da    PI: 7.0535
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.48.2e-1022816391373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avs++d++ a+ lL++++  +sp+g+  qR+a+yf+ AL+arla+ + + ++a+  s  ++++++++l+a++l++ ++P+lkf
  Eucgr.B02330.1.p 281 LRSLLILCAQAVSTNDFKTARGLLKQIRRDSSPSGNGSQRVAHYFADALEARLAG-SAGRSQAFYYSVIQKRSVADKLKAYQLYYLACPFLKF 372
                       6899***************************************************.66677778777777789******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + l  N +Il+++e+++ +HiiDf+i  G+QWp L+q+L++R++g p+l             e++e+tg+rLak++++++vpfef+++++ ++
  Eucgr.B02330.1.p 373 QILFSNYMILKSAETAKVLHIIDFGIDCGFQWPILIQELSKRTGGVPKL-------------EKIEQTGHRLAKYCKRFNVPFEFQAVASANW 452
                       ******************************************8886655.............689**********************9999** PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                       e++e+ +L+++++E++aVn+  +l++l+de+v+++ +rd vL+l+ s++P+++++  ++ ++n++ F +rf ea  + sa++d l++++ +++
  Eucgr.B02330.1.p 453 ECIEVADLKIQSDEVVAVNCLARLENLYDETVKINCQRDMVLNLIGSMKPQIFIHGIKNGSYNAPFFITRFREAPFHLSAIYDLLDTTVVHNN 545
                       ********************************************************************************************* PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        +r+++Er + grei+n+vaceg er+er et+++W+ rl+++GF+++pl+++ +k+ ++ l+  + + +++eee+++++lgW++r +  +++
  Eucgr.B02330.1.p 546 VQRSVLERDVYGREIMNIVACEGLERVERPETYKQWQLRLTRVGFQQLPLDQELMKKTRAKLSGNYHKDFELEEENNWMLLGWRGRIISCCTC 638
                       ******************************************************************888************************ PP

              GRAS 373 W 373
                       W
  Eucgr.B02330.1.p 639 W 639
                       * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.034255620IPR005202Transcription factor GRAS
PfamPF035142.8E-99281639IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MEEQPWAVPN IVAIRHTEKS LYDALGKKYP DSPEQTEGVG TNQVINSSSW NPWGRRSDQG  60
SNGTTITSSN SCHPLDPNSH DDREGNNYAS IHAKSPGDVV LQSKVDCKFQ SSVNSVDSLP  120
KNGDNFCYSG PSEVLISPIF NNNESVVQFN KGLEEARKFI PSGIHITIGQ EKDGLAPTIR  180
DKEEIGIKGS HQSENGSRGR KNHESHSARF EEGPANKQLA SYNEDPELSD LLEKLLLSNK  240
NGGLLSLECK SEKLSEIKDP QDPNGTGDHS YKKGNESTLD LRSLLILCAQ AVSTNDFKTA  300
RGLLKQIRRD SSPSGNGSQR VAHYFADALE ARLAGSAGRS QAFYYSVIQK RSVADKLKAY  360
QLYYLACPFL KFQILFSNYM ILKSAETAKV LHIIDFGIDC GFQWPILIQE LSKRTGGVPK  420
LEKIEQTGHR LAKYCKRFNV PFEFQAVASA NWECIEVADL KIQSDEVVAV NCLARLENLY  480
DETVKINCQR DMVLNLIGSM KPQIFIHGIK NGSYNAPFFI TRFREAPFHL SAIYDLLDTT  540
VVHNNVQRSV LERDVYGREI MNIVACEGLE RVERPETYKQ WQLRLTRVGF QQLPLDQELM  600
KKTRAKLSGN YHKDFELEEE NNWMLLGWRG RIISCCTCWL STIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3628863926378Protein SCARECROW
5b3h_A2e-3628863925377Protein SCARECROW
5b3h_D2e-3628863925377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02330.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043520.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724289.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724290.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724291.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4710.0A0A059D471_EUCGR; Uncharacterized protein
STRINGXP_010043520.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-153SCARECROW-like 14