PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02337.1.p
Common NameEUGRSUZ_B02337, LOC104432717
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 790aa    MW: 87863.6 Da    PI: 4.7203
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02337.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.33.9e-1154127861373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avs++d++ a +lL+++++ +s +gd  qRla+yf+++L+arla+s       + +se ++++++++l+a++l   ++P+ k+
  Eucgr.B02337.1.p 412 LRSLLILCAQAVSANDFRTAYELLKQIRQDSSASGDGSQRLAHYFANGLEARLAGSAGDRQTFFYSSELQKRTVADKLKAYQLHLSACPFKKL 504
                       6899***************************************************999999999******9********************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                         l aN  +l+ +++++ +HiiDf+is G+QWp L+q+L++R++gpp+lRiTg++ p+sg   +e++eetg+rLak++e+++vpfef+++ ++
  Eucgr.B02337.1.p 505 PILFANVVLLKIAATAKVLHIIDFGISFGFQWPILIQELSKRDGGPPELRITGIEIPQSGfrPAERIEETGRRLAKYCERFKVPFEFHAIPSR 597
                       ***********************************************************9*****************************9999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e++++e+L++++gE +aVn+  + ++l+de+v+++ +rd+vL+l++s++P+v+v+  ++ ++n++ Fl+rf eal + sa++d+l+a++p+
  Eucgr.B02337.1.p 598 NWECIRVEDLKIQSGEIVAVNCLSRFKNLYDETVEVDCPRDAVLRLIRSIKPDVFVHGISNGSYNAPFFLTRFREALFHLSAIYDMLDATVPS 690
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++++r++vEre+ grei+nvvaceg er+er et+++W+ r+ +aGF+++pl++++++ a++ +++++ + + + ees++++lgW++r + ++
  Eucgr.B02337.1.p 691 DNDQRVVVEREFYGREIMNVVACEGLERIERPETYKQWQVRVARAGFTQLPLDQEVMEMARTKMSRHYPKDFVLAEESKWMLLGWRGRIISAC 783
                       ********************************************************************777********************** PP

              GRAS 371 SaW 373
                       ++W
  Eucgr.B02337.1.p 784 TCW 786
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.701386767IPR005202Transcription factor GRAS
PfamPF035141.3E-112412786IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MESNFTGSTH AADDFETNSL AHPANSDHPS NLLDGFDINN FYVDFNSTEI TSLLYQTEPA  60
YDNPSAAVNL DGDFDFPSTD VSSKDASLQH STISNGSPSQ GGESFSPPSD YSNSTDPVLR  120
YIHQMLEEEN VEEQPWISPD DFALQDTEKS LYDLLGENST FSPEPAVQFD INQFIDSPSS  180
NSYENSSDQG GDGTTDTRTN CSQFSGPNSP DNPEGKNQAV LQGPYPGNGV LPSNMGTSSQ  240
LHTNPMSSLQ HQDEFSDSFP SDLLVSNMFS NSNSILQFNK GLEEARKFLP SSIQLTINQE  300
DYKSAPNVRE PGENGTDDGK SVKSRSESGS WGRKNHERDD ESFEEGRANK QSASYTEDGE  360
LSEMLDKVLL GCGLGGQMSG CTPENMSQSK GPPGPKGGRV RRKKGNKSTA DLRSLLILCA  420
QAVSANDFRT AYELLKQIRQ DSSASGDGSQ RLAHYFANGL EARLAGSAGD RQTFFYSSEL  480
QKRTVADKLK AYQLHLSACP FKKLPILFAN VVLLKIAATA KVLHIIDFGI SFGFQWPILI  540
QELSKRDGGP PELRITGIEI PQSGFRPAER IEETGRRLAK YCERFKVPFE FHAIPSRNWE  600
CIRVEDLKIQ SGEIVAVNCL SRFKNLYDET VEVDCPRDAV LRLIRSIKPD VFVHGISNGS  660
YNAPFFLTRF REALFHLSAI YDMLDATVPS DNDQRVVVER EFYGREIMNV VACEGLERIE  720
RPETYKQWQV RVARAGFTQL PLDQEVMEMA RTKMSRHYPK DFVLAEESKW MLLGWRGRII  780
SACTCWVPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-423947881380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02337.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043529.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043530.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043531.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043532.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724294.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D4750.0A0A059D475_EUCGR; Uncharacterized protein
STRINGXP_010043529.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]