PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02344.1.p
Common NameEUGRSUZ_B02344
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 661aa    MW: 74859.2 Da    PI: 6.2839
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02344.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.75.4e-1112826571373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 
                       l+ lL+ cA+a+s++d++ a++lL++++e +sp gd  qRla+yf ++L+arl+++  ++ +  ++s  ++++  ++ l++++l   ++P+ +
  Eucgr.B02344.1.p 282 LRALLILCAQAISTSDFRSANELLKQIREDSSPFGDGSQRLAHYFGNGLEARLVGNNIRMKDFYSTSILARTTsAADFLKYYHLNISTCPFAQ 374
                       5789***************************************************88888888866655555449999*************** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                       fs + aN +Il+ +e+++++HiiDf+i  G+QWp+L+q+L+sRpegp +lRiTg++ p++g   +e++eetg rL+k++e+++v fefn++++
  Eucgr.B02344.1.p 375 FSTFFANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLRITGIELPQAGfhPAERIEETGCRLKKYCERFDVAFEFNFIAS 467
                       ***********************************************************9999***************************999 PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       +++e +++ +L+++++E++aVn+ ++ ++llde+ + +++rd+vL+l+++++P+++v++ + +++n++ F++rf eal + s ++d l+a+l 
  Eucgr.B02344.1.p 468 RDWELIKVADLKIQSNETVAVNCLVRFKHLLDETIEDNNPRDAVLNLIRQIKPDIFVHAVRSVSYNAAFFVTRFREALFHLSDVYDLLDATLD 560
                       9******************************************************************************************** PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                        +++er ++Ere+ grei+nv+aceg+er+er et+++W+ r ++aGFk++pl+++ +k  ++ ++  + + + ++e+ +++++gW++r  + 
  Eucgr.B02344.1.p 561 CDNRERLVIEREFHGREIMNVIACEGSERIERPETYKQWQVRHMRAGFKALPLDQDFMKLFRAKMKAWYHKDFVLDEDGNWMLQGWRGRIFYG 653
                       *********************************************************************888********************* PP

              GRAS 370 vSaW 373
                        S+W
  Eucgr.B02344.1.p 654 SSCW 657
                       **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.576256638IPR005202Transcription factor GRAS
PfamPF035141.9E-108282657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEAHLVALQN TEKSLYDALG QQNLKQSDKS ASQVELSQYI ESPASNLSGS SSAHRSHDAT  60
NVTLSSSDLA DADIPYTIGE HSHAMLKNPD QNFLWNVDSN SQFLANSSSS ITNYDDGSEE  120
SLHGLLVKSF FSAGESMIQF KKGLEEASKF LLTNNQLAID PEDSKLSSET KKGTTRTGIE  180
EEINMKSSSN GFKGLQNHER DEDAFEEGRA NKQTALYTEE SELSDLFDKV LLSTENGPSM  240
CFDDKSVETG VTKDIRPPRS KRGSNRGRGR GKKQKSKNTV DLRALLILCA QAISTSDFRS  300
ANELLKQIRE DSSPFGDGSQ RLAHYFGNGL EARLVGNNIR MKDFYSTSIL ARTTSAADFL  360
KYYHLNISTC PFAQFSTFFA NYMILKFAEK ATTLHIIDFG IAFGFQWPNL IQKLSSRPEG  420
PCKLRITGIE LPQAGFHPAE RIEETGCRLK KYCERFDVAF EFNFIASRDW ELIKVADLKI  480
QSNETVAVNC LVRFKHLLDE TIEDNNPRDA VLNLIRQIKP DIFVHAVRSV SYNAAFFVTR  540
FREALFHLSD VYDLLDATLD CDNRERLVIE REFHGREIMN VIACEGSERI ERPETYKQWQ  600
VRHMRAGFKA LPLDQDFMKL FRAKMKAWYH KDFVLDEDGN WMLQGWRGRI FYGSSCWVPT  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-462866138328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02344.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043534.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043535.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043536.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724296.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724297.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4Y90.0A0A059D4Y9_EUCGR; Uncharacterized protein
STRINGXP_010043534.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14