PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02346.1.p
Common NameEUGRSUZ_B02346, LOC104432723
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 791aa    MW: 88461.9 Da    PI: 4.8215
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02346.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.41.7e-1084147872373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL+ cA+a+s++d++ a++lL++++e++sp+gd  qRla+yf+++L+arl+++ +++ +  +   ++++++++ l+al+l   ++P++k+s
  Eucgr.B02346.1.p 414 STLLILCAQAISTSDFRTANELLKQIRENSSPSGDGSQRLAHYFANGLEARLVGNETRTQHFYSILVARTTSVANILKALHLHISTCPFHKLS 506
                       579**************************************************9877777777777777777********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                           N +Il+ +e+++++HiiDf+i  G+QWp+L+q+L+sR+egp +lRiTg++ p++g   +e+leetg+ L+k++e+++vpfefn +++k+
  Eucgr.B02346.1.p 507 ICFGNYMILRIAEKATTLHIIDFGIAFGFQWPTLIQKLSSRSEGPCKLRITGIELPQAGfrPSEKLEETGRHLEKYCERFNVPFEFNCIASKN 599
                       **********************************************************9******************************99** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e+++le+L+++++E++aVn+ ++  +llde+v  + +rd+vL+l+++++P+++ ++ ++ +hn++ Fl+rf  al   sa++d+++a l  +
  Eucgr.B02346.1.p 600 WESIKLEDLKIQSNETVAVNSLYRFGNLLDETVGDNCPRDAVLNLIWQIKPDIFFHAVSNGSHNAPFFLTRFRMALFRLSAVYDMFDAILDGD 692
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s+er ++Ere+ grei+nvvaceg+er+er et+++W+ r  +aGFk++pl+++ ++  +  +++++ + + ++++  ++++gW++r L+ +S
  Eucgr.B02346.1.p 693 SNERLVIEREFYGREIMNVVACEGSERVERPETYKQWQVRHVRAGFKAIPLDQELMTLFRGKMKECYHKDFVLNDDGYWMLQGWRGRILYGAS 785
                       *******************************************************************888*********************** PP

              GRAS 372 aW 373
                       +W
  Eucgr.B02346.1.p 786 CW 787
                       ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.174387768IPR005202Transcription factor GRAS
PfamPF035145.8E-106414787IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MDPLFFDSSA CINGDDRPID SHAFSTSPDR YPSLTDGFFL DDPFLDLKSS DSAFLSNKVD  60
RPNDLPSKSI DLGIGDLMFP STRGISNGGP FGPSMTLRSA LPPLGDTDSS DPVLKYISQM  120
LLEENGEEQP WEFADQVALQ NAEESLYNAL GQQHSEVSVQ SPSQFVLSHY IESPNGNLSG  180
SASACGSRDA TSVTVSSSDS AVANILYTIE EHNHAVQENS DLDFQSNVDS SSRLLSNSSS  240
SIANYDDGSE ESLRELLVKS IFSDSESMVQ FKKGLEEASN FLPTNSQLGI NPEDSKPPLE  300
TEKGTPRMLI NEEINMRCLS DGFKGFKNHE RDEDAFEEGR ANKQTALYTE ESEFSDLFDR  360
VLLCNENGEA MCSGDKSVET GLNKDIRPQR KKRGSNRGRG RGKKQGSENT VDLSTLLILC  420
AQAISTSDFR TANELLKQIR ENSSPSGDGS QRLAHYFANG LEARLVGNET RTQHFYSILV  480
ARTTSVANIL KALHLHISTC PFHKLSICFG NYMILRIAEK ATTLHIIDFG IAFGFQWPTL  540
IQKLSSRSEG PCKLRITGIE LPQAGFRPSE KLEETGRHLE KYCERFNVPF EFNCIASKNW  600
ESIKLEDLKI QSNETVAVNS LYRFGNLLDE TVGDNCPRDA VLNLIWQIKP DIFFHAVSNG  660
SHNAPFFLTR FRMALFRLSA VYDMFDAILD GDSNERLVIE REFYGREIMN VVACEGSERV  720
ERPETYKQWQ VRHVRAGFKA IPLDQELMTL FRGKMKECYH KDFVLNDDGY WMLQGWRGRI  780
LYGASCWVPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4042078926380Protein SCARECROW
5b3h_A2e-4042078925379Protein SCARECROW
5b3h_D2e-4042078925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02346.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043537.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5670.0A0A059D567_EUCGR; Uncharacterized protein
STRINGXP_010043537.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]