PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B02347.1.p

Common Name

EUGRSUZ_B02347

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 529aa MW: 59833.1 Da PI: 6.9505

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B02347.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	80.7	2.5e-25	280	383	17	120
GRAS 17 lelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege 109 ++ a++ L++++e++sp+gd+ qRla+yf+++L+arl++s++++ + ++ +++++ ++ l+a++l ++P+ k+s aN +Il+ +e++ Eucgr.B02347.1.p 280 FRTANESLKQIRENSSPSGDASQRLAHYFANGLEARLVGSGTRMQHLFSIYVARRTSAADILKAYHLHISTCPFSKLSICFANYMILRFAEKA 372 678************************************************9999******************************** PP GRAS 110 ervHiiDfdis 120 +++HiiDf+i+ Eucgr.B02347.1.p 373 TTLHIIDFGIG 383 *******97 PP
2	GRAS	41.1	2.8e-13	385	448	156	219
GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 e+leetg+ L+k +++++vpfefn +v+k++e+++le+L+++++E +aVn++ + llde+v Eucgr.B02347.1.p 385 EKLEETGRHLEKCCKRFNVPFEFNYIVSKNWESVKLEDLKIQSNEIVAVNSSDRFRILLDETVG 448 689*************************************************999999988876 PP
3	GRAS	45.8	1e-14	451	525	299	373
GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ceg+er+er et+++W+ r ++aGFk++pl+++ +k + +++ + + + ++e+ +++++ W++r ++ S+W Eucgr.B02347.1.p 451 SCEGSERVERSETYKQWQVRHMRAGFKALPLDQELMKFFRGKMKEWYHKDFALNEDGNWMLQAWRGRIIIGSSCW 525 69*******************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.028	238	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-23	280	383	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-11	385	448	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-12	451	525	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MVDRSFRRSK SKSSLPARLR RGVFRPSRGY SLSPSGDTDS SDPVLKYISQ MLMEENMEEQ 60 PWEFANQVAL QNAEKSLYDA LGQQHSEVSD QSPSQLVLSH NIESPNSKLS GSSSARGSLD 120 AASVTENSDL DFQSNADSSS RMLSKSSSSI TNYDGSEESL HELLVKSIFT ASESMVQFKK 180 GLEEASKFLP TNNQLGINPG DSKPPSETEK GTPRMRISEE INMRRSTDKF KGLKNHKRDE 240 DAFDEGKAKK QTALYTEESE FSDLFDKLLL CNENGGGYVF RTANESLKQI RENSSPSGDA 300 SQRLAHYFAN GLEARLVGSG TRMQHLFSIY VARRTSAADI LKAYHLHIST CPFSKLSICF 360 ANYMILRFAE KATTLHIIDF GIGFEKLEET GRHLEKCCKR FNVPFEFNYI VSKNWESVKL 420 EDLKIQSNEI VAVNSSDRFR ILLDETVGDN SCEGSERVER SETYKQWQVR HMRAGFKALP 480 LDQELMKFFR GKMKEWYHKD FALNEDGNWM LQAWRGRIII GSSCWVPI*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MVDRSFRRSK SKSSLPARLR RGVFRPSRGY SLSPSGDTDS SDPVLKYISQ MLMEENMEEQ  60
PWEFANQVAL QNAEKSLYDA LGQQHSEVSD QSPSQLVLSH NIESPNSKLS GSSSARGSLD  120
AASVTENSDL DFQSNADSSS RMLSKSSSSI TNYDGSEESL HELLVKSIFT ASESMVQFKK  180
GLEEASKFLP TNNQLGINPG DSKPPSETEK GTPRMRISEE INMRRSTDKF KGLKNHKRDE  240
DAFDEGKAKK QTALYTEESE FSDLFDKLLL CNENGGGYVF RTANESLKQI RENSSPSGDA  300
SQRLAHYFAN GLEARLVGSG TRMQHLFSIY VARRTSAADI LKAYHLHIST CPFSKLSICF  360
ANYMILRFAE KATTLHIIDF GIGFEKLEET GRHLEKCCKR FNVPFEFNYI VSKNWESVKL  420
EDLKIQSNEI VAVNSSDRFR ILLDETVGDN SCEGSERVER SETYKQWQVR HMRAGFKALP  480
LDQELMKFFR GKMKEWYHKD FALNEDGNWM LQAWRGRIII GSSCWVPI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B02347.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018719698.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A059D4P0	0.0	A0A059D4P0_EUCGR; Uncharacterized protein
STRING	XP_010043539.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	3e-72	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B02347.1.p