PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02379.1.p
Common NameEUGRSUZ_B02379
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 252aa    MW: 28145.1 Da    PI: 8.1133
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02379.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-201271357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+++tkeq+ +Le+l+++  r+p+a+++++++ +l    +++ ++V++WFqN++a++++
  Eucgr.B02379.1.p 12 SRWNPTKEQIGILESLYRQgIRTPTADQIQQITGRLkaygHIEGKNVFYWFQNHKARQRQ 71
                      7*****************99**************************************97 PP
2Wus_type_Homeobox116.51.3e-371072264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+Pt+eQi iLe+ly++G+rtP++++iq+it +L++yG+ie+kNVfyWFQN+kaR+rqk
   Eucgr.B02379.1.p 10 ATSRWNPTKEQIGILESLYRQGIRTPTADQIQQITGRLKAYGHIEGKNVFYWFQNHKARQRQK 72
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.625772IPR001356Homeobox domain
SuperFamilySSF466891.77E-12880IPR009057Homeodomain-like
SMARTSM003891.6E-5976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-81271IPR009057Homeodomain-like
PfamPF000463.9E-181271IPR001356Homeobox domain
CDDcd000861.45E-51373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGGSGGGSPA TSRWNPTKEQ IGILESLYRQ GIRTPTADQI QQITGRLKAY GHIEGKNVFY  60
WFQNHKARQR QKEKQESLAY LNRYFHKSAR TAFHPPCPNA VCGPYFVPQS DIGTMYPQCP  120
KVLLPCGIKR RQKTDFVERT KTFCRTGFAY PAHPQGHHHD VTFHQTAESN NDSTVERNQE  180
TLDLFPLHPT GRAVQDTSKC SQADHDCSRA DQDCSATTST SSSSEARDGG NNGDQPFFDF  240
FSANGCFCER D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02379.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9640210.0KF964021.1 Eucalyptus grandis isolate EG5 WOX2 (WOX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043567.10.0PREDICTED: WUSCHEL-related homeobox 2
TrEMBLA0A059D5250.0A0A059D525_EUCGR; Uncharacterized protein
STRINGXP_010043567.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-54WUSCHEL related homeobox 2