PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02394.1.p
Common NameEUGRSUZ_B02394, LOC104432761
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 173aa    MW: 18861 Da    PI: 10.8233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02394.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00124365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  Eucgr.B02394.1.p 43 FTCKTCNREFPSFQALGGHRASH 65
                      89**********99999998887 PP
2zf-C2H214.69.7e-0592114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F++   L  H+r+H
  Eucgr.B02394.1.p  92 HECSICGLDFPTGQALGGHMRRH 114
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-841114No hitNo description
SMARTSM003550.164365IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-124367IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7234370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91292114IPR007087Zinc finger, C2H2
SMARTSM003550.0492114IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-1192116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVKRDREDTE VEALAVANSL MLLSRIGRST DSNRKSRPTE RMFTCKTCNR EFPSFQALGG  60
HRASHKKPKL ISGDLLRLGR TADSSPAKLK MHECSICGLD FPTGQALGGH MRRHRAAILE  120
SLVAAAAKPV PVLKKSNSKR VRGLDLNSLP MEDDLTLRLG KVAPPLVPDL VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02394.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801930.0KC480193.1 Eucalyptus grandis C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043586.11e-122PREDICTED: zinc finger protein ZAT12
TrEMBLA0A059D4T81e-120A0A059D4T8_EUCGR; Uncharacterized protein
STRINGXP_010043586.11e-121(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-34C2H2 family protein