PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B02397.1.p

Common Name

EUGRSUZ_B02397, ZFP4

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 162aa MW: 17484.6 Da PI: 10.399

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B02397.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg F+ L H+r+H Eucgr.B02397.1.p 79 HKCSICGLEFPLGQALGGHMRRH 101 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.35E-8	28	101	No hit	No description
PROSITE profile	PS50157	10.097	30	57	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.7E-11	30	54	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.47	30	52	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.2E-10	79	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.075	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.746	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MVKRDREDTE VEALAVANSL MLLSRVERIF ACKTCNREFS SFQALGGHRA SHKKPKLISG 60 DLLHLGHSVD SSLDKPKMHK CSICGLEFPL GQALGGHMRR HRAAILKRLA AAAAAAKPVP 120 VLKKSNSKIV TGLDLNSSPM EDDLTLRLGK FAPPLALDLV L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B02397.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC480192	0.0	KC480192.1 Eucalyptus grandis C2H2-type zinc finger protein 4 (ZFP4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018720944.1	1e-92	PREDICTED: zinc finger protein ZAT8
TrEMBL	M9Z7K0	1e-111	M9Z7K0_EUCGR; C2H2-type zinc finger protein 4
STRING	XP_010043588.1	4e-92	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	6e-37	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B02397.1.p