PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02399.1.p
Common NameEUGRSUZ_B02399, LOC104432766, ZFP3
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 174aa    MW: 18970.9 Da    PI: 9.1636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02399.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009794116123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +Cg  F+    L  H+r+H
  Eucgr.B02399.1.p  94 HECAICGLEFPLGQALGGHMRRH 116
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.48E-844116No hitNo description
SMARTSM003550.474668IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-114670IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0974673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139126.6E-1093118IPR007087Zinc finger, C2H2
SMARTSM003550.8794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.78794121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVKRDREDTE VEALALANCL MLLSRVGEST DSPWLNHKSR PTERMFACKT CNREFSSFQA  60
LGGHRASHKK PKLSGDLFHL GRTADSSPAK PKTHECAICG LEFPLGQALG GHMRRHRAAM  120
AESLATAEKP VPVLKKSNSK RVMCLDLNSS PTEDDLTLRL GKAAPPLVLD LVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02399.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801910.0KC480191.1 Eucalyptus grandis C2H2-type zinc finger protein 3 (ZFP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043590.11e-124PREDICTED: zinc finger protein ZAT8
TrEMBLM9YYG31e-123M9YYG3_EUCGR; C2H2-type zinc finger protein 3
STRINGXP_010043590.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-41C2H2 family protein