PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02401.1.p
Common NameEUGRSUZ_B02401
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 242aa    MW: 27345.5 Da    PI: 7.404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02401.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.2e-174994148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Eucgr.B02401.1.p 49 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 94
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.1461743IPR017877Myb-like domain
SuperFamilySSF466898.77E-222997IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-102955IPR009057Homeodomain-like
PROSITE profilePS5129426.8234498IPR017930Myb domain
SMARTSM007177.6E-174896IPR001005SANT/Myb domain
PfamPF002499.1E-164993IPR001005SANT/Myb domain
CDDcd001671.56E-125194No hitNo description
Gene3DG3DSA:1.10.10.601.3E-205695IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDRPRRFPTG VLCWTFWRSP MGFYSEGLNR TGKSCRLRWV NYLHPGLKRG KMTPQEERLV  60
LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTHMRKEAQE KKHALSSSSA SSNISSSSSN  120
NPTVDSLTTR ETGKESFYGT GGPGDMLTST EKNIEEQGKS ESACSFDDIW KEIALADGYG  180
ILPIYDGYSE ESCNFSCPPM ASPTMEYNSD PLWLTDEEES KMFPVNQFIS NYGNGGAYIT  240
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-18309837105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-17309837105C-Myb DNA-Binding Domain
1msf_C1e-17309837105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02401.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043594.11e-158PREDICTED: transcription factor MYB59
SwissprotQ9LX822e-64MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059D5541e-180A0A059D554_EUCGR; Uncharacterized protein
STRINGXP_010043594.11e-158(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.32e-66myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]