PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02401.2.p
Common NameEUGRSUZ_B02401
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 191aa    MW: 21247.3 Da    PI: 4.6103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02401.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16243548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Eucgr.B02401.2.p  2 TPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                      9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.781147IPR017930Myb domain
CDDcd001677.49E-13143No hitNo description
SMARTSM007171.1E-11145IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-12247IPR009057Homeodomain-like
PfamPF002491.5E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-20244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTPQEERLVL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKEAQEK KHALSSSSAS  60
SNISSSSSNN PTVDSLTTRE TGKESFYGTG GPGDMLTSTE KNIEEQGKSE SACSFDDIWK  120
EIALADGYGI LPIYDGYSEE SCNFSCPPMA SPTMEYNSDP LWLTDEEESK MFPVNQFISN  180
YGNGGAYITG *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02401.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972741e-35BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043594.11e-139PREDICTED: transcription factor MYB59
SwissprotQ4JL842e-44MYB59_ARATH; Transcription factor MYB59
SwissprotQ9LX823e-44MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059D5W71e-139A0A059D5W7_EUCGR; Uncharacterized protein
STRINGXP_010043594.11e-138(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.24e-46myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]