PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02435.1.p
Common NameEUGRSUZ_B02435
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 232aa    MW: 26657.3 Da    PI: 9.4672
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02435.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-20666257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Eucgr.B02435.1.p  6 STRWCPTPEQLMILEEMYRSgVRTPNAAHIQQITAHLslygKIEGKNVFYWFQNHKARDRQ 66
                      58*****************99*************************************996 PP
2Wus_type_Homeobox120.28.5e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
   Eucgr.B02435.1.p  5 ASTRWCPTPEQLMILEEMYRSGVRTPNAAHIQQITAHLSLYGKIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.042267IPR001356Homeobox domain
SMARTSM003892.6E-6471IPR001356Homeobox domain
CDDcd000863.15E-4767No hitNo description
PfamPF000464.5E-18766IPR001356Homeobox domain
SuperFamilySSF466898.98E-11766IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSPSASTRWC PTPEQLMILE EMYRSGVRTP NAAHIQQITA HLSLYGKIEG KNVFYWFQNH  60
KARDRQKLRR KLSKQLHNNH QCQLNNSLLY NHHHHPHYDH QHMIMNNHHN YHFLSFLHPQ  120
SPPPPPAAST DLQFAYYNPT STLITQGGFG DATAQVMNID KWTAEMSEKT TVEMEKLSKK  180
MYSDLKPMTI GAEVVSTLPV SLSRTALKTL DLFPTRATNL KEERNNLELS I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02435.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9539300.0KF953930.1 UNVERIFIED: Eucalyptus grandis cultivar EG5 WOX13.1 protein-like (WOX13.1) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046418.11e-107PREDICTED: WUSCHEL-related homeobox 3
TrEMBLA0A059D5E31e-174A0A059D5E3_EUCGR; Uncharacterized protein
STRINGXP_010046418.11e-107(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-46WOX family protein